SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0056.Seq
         (875 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22760.1 68418.m02658 PHD finger family protein contains Pfam...    31   1.0  
At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r...    30   2.3  
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r...    30   2.3  
At5g63090.4 68418.m07921 LOB domain protein / lateral organ boun...    28   7.1  
At5g63090.3 68418.m07920 LOB domain protein / lateral organ boun...    28   7.1  
At5g63090.2 68418.m07919 LOB domain protein / lateral organ boun...    28   7.1  
At5g63090.1 68418.m07918 LOB domain protein / lateral organ boun...    28   7.1  
At5g03250.1 68418.m00274 phototropic-responsive NPH3 family prot...    28   7.1  
At4g00240.1 68417.m00031 phospholipase D beta 2 / PLD beta 2 (PL...    28   7.1  
At5g11000.1 68418.m01281 expressed protein                             28   9.4  
At4g20010.1 68417.m02929 expressed protein contains Pfam PF05329...    28   9.4  
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ...    28   9.4  
At1g64570.1 68414.m07319 expressed protein                             28   9.4  
At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong s...    28   9.4  

>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
            domain, PF00628: PHD-finger
          Length = 1566

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
 Frame = -2

Query: 466  NCSLATRSGQPNLSVVWASTVVPWLPKTASVS*TPCTPW-----VRLRNRT*P-FCGLKN 305
            N  LA RS QPNL  V     +P+ P    +  T C  W     V+L     P   G K 
Sbjct: 1229 NVMLAGRSDQPNLQPVCWICKLPYNPGLTYIHCTSCDMWYHIEAVKLEESKIPEVVGFKC 1288

Query: 304  CR*TSRNSPLKCP 266
            CR     SP  CP
Sbjct: 1289 CRCRRIRSP-DCP 1300


>At5g35210.2 68418.m04175 peptidase M50 family protein /
            sterol-regulatory element binding protein (SREBP) site 2
            protease family protein contains PFam PF02163:
            sterol-regulatory element binding protein (SREBP) site 2
            protease
          Length = 1409

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
 Frame = -2

Query: 466  NCSLATRSGQPNLSVVWASTVVPWLPKTASVS*TPCTPW-----VRLRNRT*P-FCGLKN 305
            N  LA RS +P+L  V    ++P+ P    +  T C  W     V+L++   P   G K 
Sbjct: 1092 NILLAGRSDKPSLEPVCGICLLPYNPGLTYIHCTKCEKWFHTEAVKLKDSQIPEVVGFKC 1151

Query: 304  CR*TSRNSPLKCP 266
            C+     SP  CP
Sbjct: 1152 CKCRRIRSP-DCP 1163


>At5g35210.1 68418.m04174 peptidase M50 family protein /
            sterol-regulatory element binding protein (SREBP) site 2
            protease family protein contains PFam PF02163:
            sterol-regulatory element binding protein (SREBP) site 2
            protease
          Length = 1576

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
 Frame = -2

Query: 466  NCSLATRSGQPNLSVVWASTVVPWLPKTASVS*TPCTPW-----VRLRNRT*P-FCGLKN 305
            N  LA RS +P+L  V    ++P+ P    +  T C  W     V+L++   P   G K 
Sbjct: 1092 NILLAGRSDKPSLEPVCGICLLPYNPGLTYIHCTKCEKWFHTEAVKLKDSQIPEVVGFKC 1151

Query: 304  CR*TSRNSPLKCP 266
            C+     SP  CP
Sbjct: 1152 CKCRRIRSP-DCP 1163


>At5g63090.4 68418.m07921 LOB domain protein / lateral organ
           boundaries protein (LOB) identical to LOBa [Arabidopsis
           thaliana] GI:17484100, SP|Q9FML4 LATERAL ORGAN
           BOUNDARIES protein {Arabidopsis thaliana}
          Length = 186

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 145 EELHLFTNDHRAYAASNSVVIVVEVRTHQ 231
           EE H F N H+ + ASN   ++ E+  HQ
Sbjct: 35  EEPHKFANVHKIFGASNVTKLLNELLPHQ 63


>At5g63090.3 68418.m07920 LOB domain protein / lateral organ
           boundaries protein (LOB) identical to LOBa [Arabidopsis
           thaliana] GI:17484100, SP|Q9FML4 LATERAL ORGAN
           BOUNDARIES protein {Arabidopsis thaliana}
          Length = 186

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 145 EELHLFTNDHRAYAASNSVVIVVEVRTHQ 231
           EE H F N H+ + ASN   ++ E+  HQ
Sbjct: 35  EEPHKFANVHKIFGASNVTKLLNELLPHQ 63


>At5g63090.2 68418.m07919 LOB domain protein / lateral organ
           boundaries protein (LOB) identical to LOBa [Arabidopsis
           thaliana] GI:17484100, SP|Q9FML4 LATERAL ORGAN
           BOUNDARIES protein {Arabidopsis thaliana}
          Length = 186

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 145 EELHLFTNDHRAYAASNSVVIVVEVRTHQ 231
           EE H F N H+ + ASN   ++ E+  HQ
Sbjct: 35  EEPHKFANVHKIFGASNVTKLLNELLPHQ 63


>At5g63090.1 68418.m07918 LOB domain protein / lateral organ
           boundaries protein (LOB) identical to LOBa [Arabidopsis
           thaliana] GI:17484100, SP|Q9FML4 LATERAL ORGAN
           BOUNDARIES protein {Arabidopsis thaliana}
          Length = 186

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 145 EELHLFTNDHRAYAASNSVVIVVEVRTHQ 231
           EE H F N H+ + ASN   ++ E+  HQ
Sbjct: 35  EEPHKFANVHKIFGASNVTKLLNELLPHQ 63


>At5g03250.1 68418.m00274 phototropic-responsive NPH3 family protein
           contains some similarity to root phototropism RPT2
           [Arabidopsis thaliana] gi|6959488|gb|AAF33112, a signal
           transducer of phototropic response PMID:10662859
          Length = 592

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 1   NHALHHFIIVQDIAFDRFRLRTNLHFQFFVNAAVDCV--QHG 120
           N  L   +IVQ + F++ RLRT++   FFV+  +D    QHG
Sbjct: 484 NERLPLRVIVQVLFFEQLRLRTSVSGWFFVSENLDNPDNQHG 525


>At4g00240.1 68417.m00031 phospholipase D beta 2 / PLD beta 2
           (PLDBETA2) / PLDdelta1 identical to SP|O23078
           Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD
           beta 2) (PLDdelta1) [Arabidopsis thaliana]; contains
           Pfam profiles: PF00614 phospholipase D.active site
           motif, PF00168 C2 domain
          Length = 927

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -3

Query: 429 YRWYGPRRSYPGYQKQLPFPEHPVHHGSVSGT---EHDH 322
           Y W  P   Y   +   P+P  P HHGS+S +   +H H
Sbjct: 4   YGWNYPYYPYRPPRPNPPYPAPPHHHGSMSHSGPLDHHH 42


>At5g11000.1 68418.m01281 expressed protein
          Length = 389

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 293 SSAAVFQTTEWSCSVPETDPWCTGCSGNGS 382
           SSA      EW+ S  E +    GCSG+GS
Sbjct: 345 SSACSSSVMEWASSADEAEYGGGGCSGSGS 374


>At4g20010.1 68417.m02929 expressed protein contains Pfam PF05329:
           Protein of unknown function (DUF731)
          Length = 371

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 371 LNTLYTMGPSPEPNMTILWSEKLPLNFKKFAAKVSID 261
           LN +  M PSP P M +  SEK     KK  A+   D
Sbjct: 191 LNFIQPMSPSPSPFMVMSSSEKEESGIKKQPARAKQD 227


>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}; contains Pfam profile:
           PF00076 RNA recognition motif (aka RRM, RBD, or RNP
           domain)
          Length = 483

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 414 PRRSYPGYQKQLPFPEHP-VHHGSVSGTEHDH 322
           P  SY GY  Q P+ ++P  HHG     +HD+
Sbjct: 405 PPPSYGGYM-QPPYQQYPPYHHGHSQQADHDY 435


>At1g64570.1 68414.m07319 expressed protein
          Length = 1239

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 334 GSGDGPMVYRVFRKRKLFLVTRVRPSRPIPPID 432
           G+   P++ R +R RK+F  + VR +  +PP++
Sbjct: 750 GASKAPIIARPYRSRKVFNRSVVRLAPDLPPVN 782


>At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong
           similarity to SPL1-Related2 protein [Arabidopsis
           thaliana] GI:6006427; contains Pfam profile PF03110: SBP
           domain
          Length = 1035

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +3

Query: 270 HFSGEFLEVQRQFFRPQNGHVRFRRRTHGVQGVQETEAVFGNQGTT 407
           H   EF E +R   R   GH R RR+T   + V     V GN  TT
Sbjct: 168 HLLSEFDEGKRSCRRRLAGHNRRRRKTTQPEEVASGVVVPGNHDTT 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,535,486
Number of Sequences: 28952
Number of extensions: 432905
Number of successful extensions: 1169
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -