Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0045.Seq
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02420.1 68416.m00229 expressed protein                             32   0.26 
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea...    27   7.3  
At4g09110.1 68417.m01503 zinc finger (C3HC4-type RING finger) fa...    27   7.3  
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica...    27   9.7  

>At3g02420.1 68416.m00229 expressed protein
          Length = 348

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -3

Query: 350 VDIYFK*KLVLSRFFLYFFYCLDVWTSSQPTCVKWLLEPI 231
           + +YF+  +V ++ F+YF YCL   TS    C+K+ L PI
Sbjct: 188 LQVYFQ-SIVAAKDFIYFIYCLTFVTSH--LCLKFALIPI 224


>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
           sapiens]
          Length = 726

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -2

Query: 147 SNRNALLLHGRNRQGGGTYPCGLTRGPTTSNYANYNFAGLIFITR 13
           SN+ +L     NR      P   + GP+  N    N    IF+TR
Sbjct: 288 SNQTSLAAENENRTSSPPLPLATSSGPSGPNSVPGNSPSNIFLTR 332


>At4g09110.1 68417.m01503 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 302

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 290 CLDVWTSSQPTC 255
           C+DVW SSQ TC
Sbjct: 150 CIDVWLSSQSTC 161


>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
            domain-containing protein similar to transcriptional
            activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
            profiles PF00271: Helicase conserved C-terminal domain,
            PF00176: SNF2 family N-terminal domain
          Length = 2055

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = +3

Query: 90   GRYHHPAYFC---REAVMRFGLKGGTAVV 167
            GRY HPAY C   RE + R  L    + V
Sbjct: 1711 GRYRHPAYCCERYRELIQRHILSASDSAV 1739


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,194,646
Number of Sequences: 28952
Number of extensions: 199324
Number of successful extensions: 419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)