Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0030.Seq
         (454 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19610.1 68416.m02486 hypothetical protein                          29   1.9  
At2g18465.1 68415.m02150 DNAJ heat shock N-terminal domain-conta...    29   1.9  
At5g57530.1 68418.m07188 xyloglucan:xyloglucosyl transferase, pu...    28   2.6  
At1g02410.1 68414.m00188 cytochrome c oxidase assembly protein C...    28   2.6  
At5g39960.1 68418.m04846 GTP-binding family protein contains Pfa...    27   5.9  
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    27   5.9  
At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containi...    27   7.8  
At5g33393.1 68418.m03983 hypothetical protein                          27   7.8  
At3g19570.2 68416.m02482 expressed protein contains Pfam domain,...    27   7.8  
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,...    27   7.8  

>At3g19610.1 68416.m02486 hypothetical protein
          Length = 612

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
 Frame = +3

Query: 63  RSRWKSSPSITASAHRATSETTWASTHRR-----PAPRWSTATSH-AKSN 194
           RS   +SPS++  ++    E + + T RR     P+PRWS + S+ ++SN
Sbjct: 232 RSSSATSPSLSIRSYGGIEEKSSSRTRRRDVVVSPSPRWSKSLSYGSRSN 281


>At2g18465.1 68415.m02150 DNAJ heat shock N-terminal
           domain-containing protein low similarity to dnaJ
           [Clostridium acetobutylicum] GI:144832; contains Pfam
           profile PF00226 DnaJ domain
          Length = 268

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 252 RTRWTTRNEGKRXFRCT*TGWIWHERSRWTT*GRAAYAWRPTWF 121
           R RWT +++     + +  G+ W E   WTT  + + +W    F
Sbjct: 154 RERWTAQSQKASYSKDSTAGFEWREGWSWTTQSQRSKSWNKESF 197


>At5g57530.1 68418.m07188 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase XTR9 GI:4218963 from
           [Arabidopsis thaliana]
          Length = 285

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 6   WRWCTTRLNGRYWMWT 53
           W W T   N   WMWT
Sbjct: 230 WNWVTCNANSNSWMWT 245


>At1g02410.1 68414.m00188 cytochrome c oxidase assembly protein CtaG
           / Cox11 family similar to cytochrome c oxidase assembly
           protein cox11 GI:1244782 from [Saccharomyces
           cerevisiae]; similar to Cytochrome c oxidase assembly
           protein COX11, mitochondrial precursor (SP:Q9Y6N1){Homo
           sapiens}; contains Pfam PF04442: Cytochrome c oxidase
           assembly protein CtaG / Cox11
          Length = 287

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 48  WTRSLRSRWKSSPSITASAHRATSETTWASTHRRPAPRWSTATSHAK 188
           + RS R  W SS S + ++H AT+++   S HR+ +    + T   K
Sbjct: 46  YLRSKRVFWGSSSSWSLNSHSATAKSMLDSAHRQYSTHSPSETKSQK 92


>At5g39960.1 68418.m04846 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 616

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +3

Query: 9   RWCTTRLNGRYWMWTRSLRSR--WKSSPS 89
           RWC+    GR   W R + SR  WK + S
Sbjct: 498 RWCSRLSTGRLNRWLRKVMSRHSWKDTAS 526


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1355

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 94   VIEGEDFHLDRKDLVHIQYLPLSR 23
            V++G DF++   D+VH + LP+SR
Sbjct: 1009 VVDGNDFNI-LDDVVHFELLPVSR 1031


>At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 900

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 161 VVHRDLSCQIQPVHVHRNXLFPSFLVVHRVLPTETTI 271
           + H  +SCQ  PV V     F SF +  + +PT   +
Sbjct: 526 IAHEAISCQALPVAVASLSKFLSFYISGKKMPTTEVV 562


>At5g33393.1 68418.m03983 hypothetical protein
          Length = 435

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 243 WTTRNEGKRXFRCT*TGWI-WHERSRWTT 160
           WT  N G+R FRC   G++ W +  +  T
Sbjct: 44  WTDDNSGRRFFRCDVHGFVSWSDVEKQCT 72


>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 57  SLRSRWKSSPSITASAHRATSETTWASTHRRPAPRWSTATS 179
           S   R+ S   +T+S    TS    A+    P+  W+TATS
Sbjct: 361 SQSKRFSSDSPLTSSPRGMTSPIRGATRPASPSKLWATATS 401


>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 627

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 57  SLRSRWKSSPSITASAHRATSETTWASTHRRPAPRWSTATS 179
           S   R+ S   +T+S    TS    A+    P+  W+TATS
Sbjct: 361 SQSKRFSSDSPLTSSPRGMTSPIRGATRPASPSKLWATATS 401


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,859,365
Number of Sequences: 28952
Number of extensions: 164797
Number of successful extensions: 438
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)