Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0026.Seq
         (830 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family...    36   0.025
At5g02010.1 68418.m00120 expressed protein contains Pfam profile...    29   5.0  
At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger) fa...    28   8.7  

>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
           protein (ROS1) similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1393

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +1

Query: 220 TASPRFIGQT*IPRSVSQPVETGTASEVDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRS 399
           TAS  F GQT IP   ++ ++ GT        +   +  Q+ K+P+ PK+     K +R 
Sbjct: 70  TASLIFSGQTPIPTRNTEVMQKGTEEVESLSSVSNNVAEQILKTPEKPKRKKHRPKVRRE 129

Query: 400 A 402
           A
Sbjct: 130 A 130


>At5g02010.1 68418.m00120 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 546

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 296 VK*TMTGYLKKL*INSKNLPRRRSSRRAQGKQRDQQATTKKSFEV 430
           VK  +T Y+ K     KNLP  RSSR +  ++   +   K+S  V
Sbjct: 495 VKRVLTAYVTKNEPRLKNLPLERSSRSSSSERLSLEKCMKESLNV 539


>At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger)
           family protein (ATL6) contains Pfam profile: PF00097:
           Zinc finger, C3HC4 type (RING finger)
          Length = 398

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 332 TISLGSQS*STSLAVPVSTG*DTERGIYVWPMKRGLAVLRREPTLHQHQG 183
           +I LG+     + AVP STG D+ R    W   R  + L R  ++H  +G
Sbjct: 321 SIRLGATGSVRASAVPNSTGSDSVRAGDRWAFLRNASFLWRNSSVHVPRG 370


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,571,485
Number of Sequences: 28952
Number of extensions: 287664
Number of successful extensions: 717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)