Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0013.Seq
(777 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47250.3 68416.m05132 expressed protein contains Pfam profile... 31 0.85
At3g47250.2 68416.m05131 expressed protein contains Pfam profile... 31 0.85
At3g47250.1 68416.m05130 expressed protein contains Pfam profile... 31 0.85
At1g71080.1 68414.m08203 expressed protein 29 2.6
At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containi... 29 4.5
At1g05010.1 68414.m00502 1-aminocyclopropane-1-carboxylate oxida... 29 4.5
At5g63720.1 68418.m07998 hypothetical protein 28 6.0
At4g36650.1 68417.m05201 transcription factor IIB (TFIIB) family... 28 7.9
>At3g47250.3 68416.m05132 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 480
Score = 31.1 bits (67), Expect = 0.85
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +2
Query: 482 VSNLKLLFSSLGR*PFIALKTWKALTLGLISLVLSGAMVIFKFTKPKVVNYEEFHYPQHH 661
VS++K S G+ P I L++ + + + S A V K KPKVV+ +HY ++H
Sbjct: 36 VSHIKRNLQSSGK-PLILLESAGKASCCIFRIPDSLAEVNPKAYKPKVVSIGPYHYGENH 94
Query: 662 VEHHVDHQ 685
++ H+
Sbjct: 95 LQMIQQHK 102
>At3g47250.2 68416.m05131 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 480
Score = 31.1 bits (67), Expect = 0.85
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +2
Query: 482 VSNLKLLFSSLGR*PFIALKTWKALTLGLISLVLSGAMVIFKFTKPKVVNYEEFHYPQHH 661
VS++K S G+ P I L++ + + + S A V K KPKVV+ +HY ++H
Sbjct: 36 VSHIKRNLQSSGK-PLILLESAGKASCCIFRIPDSLAEVNPKAYKPKVVSIGPYHYGENH 94
Query: 662 VEHHVDHQ 685
++ H+
Sbjct: 95 LQMIQQHK 102
>At3g47250.1 68416.m05130 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 480
Score = 31.1 bits (67), Expect = 0.85
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +2
Query: 482 VSNLKLLFSSLGR*PFIALKTWKALTLGLISLVLSGAMVIFKFTKPKVVNYEEFHYPQHH 661
VS++K S G+ P I L++ + + + S A V K KPKVV+ +HY ++H
Sbjct: 36 VSHIKRNLQSSGK-PLILLESAGKASCCIFRIPDSLAEVNPKAYKPKVVSIGPYHYGENH 94
Query: 662 VEHHVDHQ 685
++ H+
Sbjct: 95 LQMIQQHK 102
>At1g71080.1 68414.m08203 expressed protein
Length = 326
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 214 LRNVRQSGQVSPESTLRVKVPEEIT---KSAASEYVPRSLLTDLPSELDMPLDGEDE 375
LR+VR G+ + S V V ++ ++A S V RSLL D+P E++ G+ E
Sbjct: 112 LRHVRTPGESAAASQSAVPVEHRLSPVGRAAKSPQVNRSLLPDVPVEVERIEIGKPE 168
>At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 752
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 490 FKASVLVPWALALHRSEDLE-GSYSWSHFPCFIWCHGHLQIHEAQGRELRRIPLSST 657
+ S L+ AL ++ E + SW F W H +L++ E G ELR++ T
Sbjct: 534 YARSGLLDEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDT 590
>At1g05010.1 68414.m00502 1-aminocyclopropane-1-carboxylate oxidase
/ ACC oxidase / ethylene-forming enzyme (ACO) (EAT1)
Identical to 1-aminocyclopropane-1-carboxylate oxidase
(ACC oxidase) gb|X66719 (EAT1). ESTs gb|T43073,
gb|T5714, gb|R90435, gb|R44023, gb|AA597926,
gb|AI099676, gb|AA650810 and gb|29725 come from this
gene
Length = 323
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +2
Query: 20 KLVKNIYNECLSQYSVECVKPRTLQWMSSVANDDEIKITEDLSIVKTGTVED--DESADP 193
K+ K Y +C+ + E +K R L + S ND + + T L + + D D D
Sbjct: 51 KMTKEHYKKCMEERFKESIKNRGLDSLRSEVNDVDWESTFYLKHLPVSNISDVPDLDDDY 110
Query: 194 R-LAKDPAYEMFDKVDKFLQSLL 259
R L KD A K++K + LL
Sbjct: 111 RTLMKDFA----GKIEKLSEELL 129
>At5g63720.1 68418.m07998 hypothetical protein
Length = 492
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +2
Query: 602 FKFTKPKVVNYEEFHYPQHHVEHHVDHQALPXDAQGPYQARFYEDAHE 745
FK K K+ FH+ HH HH H A Q++F+ E
Sbjct: 357 FKRIKNKIGQI--FHHHHHHHHHHHHHDKEKPSAWNKLQSKFHHKHQE 402
>At4g36650.1 68417.m05201 transcription factor IIB (TFIIB) family
protein contains Pfam domain, PF00382: Transcription
factor TFIIB repeat
Length = 503
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 2 ATYPASKLVKNIYNECLSQYSVECVKPRTLQWMSSVANDDEIKITEDLSIV 154
AT ++ V+ + CL Q E +PRTLQ +S AN + +I + + I+
Sbjct: 164 ATCLRNRSVEALATACLVQAIREAQEPRTLQEISIAANVQQKEIGKYIKIL 214
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,230,218
Number of Sequences: 28952
Number of extensions: 299624
Number of successful extensions: 1009
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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