Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0035
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    32   0.40 
At3g21150.1 68416.m02672 zinc finger (B-box type) family protein...    28   6.6  
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel...    27   8.7  
At1g74690.1 68414.m08650 calmodulin-binding family protein low s...    27   8.7  
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p...    27   8.7  

>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 123  VTGTCDAKFLIW-YH*AVTSRTCATESAEGSG 31
            VTG+ D+  L+W  H A TSRT  +E + GSG
Sbjct: 2684 VTGSRDSTVLLWRIHKAFTSRTSVSEPSTGSG 2715


>At3g21150.1 68416.m02672 zinc finger (B-box type) family protein
           contains Pfam profile:PF01760 CONSTANS family zinc
           finger
          Length = 225

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +1

Query: 202 LSGFRLPWPP--SCCXERPTLSWC 267
           +SG  LPWPP  +CC E  + S C
Sbjct: 58  VSGPLLPWPPRTTCCSESSSSSCC 81


>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
           putative (CNGC16) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 705

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
 Frame = -2

Query: 222 WKSESAKECATTHHPKQPALKMD-------GAEAFCLYTTVTGTCDAK 100
           W+ E  KE   TH P    L +D       G +A+   T V   CDA+
Sbjct: 250 WRRECIKEMNATHSPSCSLLFLDCGSLHDPGRQAWMRITRVLSNCDAR 297


>At1g74690.1 68414.m08650 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 587

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 345 PLGTVIRSPASSFE*AGVLTHLKFENRLRXFR 440
           P  +V + PAS+FE + V T  +FE   R FR
Sbjct: 282 PKKSVRKVPASNFESSSVQTSFEFEKPKRSFR 313


>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
            subunit, putative similar to contains 6 WD-40 repeats
            (PF00400); katanin p80 subunit (GI:3005601)
            [Strongylocentrotus purpuratus]
          Length = 974

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +3

Query: 282  LGALTLRLVHPXAPFLLTKIGPLGTVIRSPASSFE*AGVLTHLKFEN 422
            LG+ T R V+     LL  +   GTVIRS  S+    GV  H    N
Sbjct: 881  LGSRTERPVNVSLDMLLKLVAVFGTVIRSTVSAPRIVGVDLHANERN 927


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,768,940
Number of Sequences: 28952
Number of extensions: 337356
Number of successful extensions: 688
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)