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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0032
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing...    27   9.0  

>At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing
           protein / CBS domain-containing protein similar to
           SP|Q47334 Polysialic acid capsule expression protein
           kpsF {Escherichia coli}; contains Pfam profiles PF01380:
           sugar isomerase (SIS) domain, PF00571: CBS domain
          Length = 350

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 141 SLKN*GSAYTHLESDSLLN-YQGVYKMKQHFF 49
           SLKN GS++  +  D+LLN ++    +  HFF
Sbjct: 18  SLKNGGSSHQEISHDNLLNLFKSQQDLLNHFF 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,873,978
Number of Sequences: 28952
Number of extensions: 228383
Number of successful extensions: 413
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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