Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0030
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69270.1 68414.m07941 leucine-rich repeat family protein / pr...    28   5.4  
At2g26860.2 68415.m03223 F-box family protein contains F-box dom...    27   7.2  
At2g26860.1 68415.m03222 F-box family protein contains F-box dom...    27   7.2  
At5g34930.1 68418.m04119 arogenate dehydrogenase identical to ar...    27   9.5  
At3g02130.1 68416.m00180 leucine-rich repeat transmembrane prote...    27   9.5  

>At1g69270.1 68414.m07941 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 540

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +2

Query: 164 LTELHDLCHPRPAEL-IASCTSLVRE*YEI*LTNLFLDCNWLRITHNYVSLLMFNSFCYV 340
           L+ LH+ C P+     I     L+   Y   L++  L    L  + ++V+  +  +F YV
Sbjct: 370 LSYLHEQCSPKVLHRDIKPSNILLDNNYNAYLSDFGLS-KLLGTSQSHVTTGVAGTFGYV 428

Query: 341 ALPEECAC*NSDSADVFLYIVLISNML 421
           A      C  S+ ADV+ Y +++  ++
Sbjct: 429 APEYAMTCRVSEKADVYSYGIVLLELI 455


>At2g26860.2 68415.m03223 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 355

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 193 WMTKIVEFGQHYTSSSRIQTV*TQNL*ILQESVIKV*HNTIF 68
           W+ K+     HY S   IQ   T+NL +L+  VI+  H   F
Sbjct: 40  WVPKLTFVMNHYESDLPIQDFITKNLRLLKPQVIESFHLQCF 81


>At2g26860.1 68415.m03222 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 405

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 193 WMTKIVEFGQHYTSSSRIQTV*TQNL*ILQESVIKV*HNTIF 68
           W+ K+     HY S   IQ   T+NL +L+  VI+  H   F
Sbjct: 40  WVPKLTFVMNHYESDLPIQDFITKNLRLLKPQVIESFHLQCF 81


>At5g34930.1 68418.m04119 arogenate dehydrogenase identical to
           arogenate dehydrogenase GI:16903098 from [Arabidopsis
           thaliana]; contains Pfam profile: PF02153: prephenate
           dehydrogenase
          Length = 640

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 143 ARRRCVM-LTELHDLCHPRPAELIASCTSLV 232
           ARR  V   T+LHDLC   P +++  CTS++
Sbjct: 90  ARRLGVSYFTDLHDLCERHP-DVVLLCTSIL 119


>At3g02130.1 68416.m00180 leucine-rich repeat transmembrane protein
            kinase, putative contains Pfam profile: Eukaryotic
            protein kinase domain
          Length = 985

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +2

Query: 164  LTELHDLCHPRPAEL-IASCTSLVRE*YEI*LTNLFLDCNWLRITHNYVSLLMFNSFCYV 340
            L  LHD C PR     +     L+ +     L++  L    L  +  + +  +  +F YV
Sbjct: 815  LAYLHDQCVPRVLHRDVKPSNILLDDDCNAYLSDFGL-ARLLGTSETHATTGVAGTFGYV 873

Query: 341  ALPEECAC*NSDSADVFLYIVLISNML 421
            A      C  SD ADV+ Y V++  +L
Sbjct: 874  APEYAMTCRVSDKADVYSYGVVLLELL 900


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,892,038
Number of Sequences: 28952
Number of extensions: 191213
Number of successful extensions: 343
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)