Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0023
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein...    29   2.2  
At5g35890.1 68418.m04310 hypothetical protein                          29   2.9  
At2g30990.1 68415.m03780 expressed protein contains Pfam profile...    29   3.9  
At2g18120.1 68415.m02109 lateral root primordium (LRP) protein-r...    27   8.9  

>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 257

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
 Frame = +2

Query: 464 VRVNCSNFSLTETCGPRGSAREKACIHGKREQNGL----NCKYADVFIAGPETNERARDG 631
           V  NCSN  +  +CG  G  R + C +       L    NC +    +A   TN++A   
Sbjct: 104 VASNCSNEGICHSCGKSGH-RARDCSNSDSRAGDLRLCNNC-FKQGHLAADCTNDKACKN 161

Query: 632 LPSVMGINRSCREHRTC 682
             +   I R CR    C
Sbjct: 162 CRTSGHIARDCRNDPVC 178


>At5g35890.1 68418.m04310 hypothetical protein 
          Length = 287

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -1

Query: 239 ANIIIDLAARCSVISRLRRHCNMTVASYLDISYRVTYIIHVNNVYATXVTGN 84
           +++ I +   C+ ISR   +CN + AS    S+R+  ++++   YA  +  N
Sbjct: 77  SHLSISMVLVCNFISRTLANCNSSSASSSHQSFRLMDLVYLGFRYAIRLENN 128


>At2g30990.1 68415.m03780 expressed protein contains Pfam profile:
           PF05097 protein of unknown function (DUF688)
          Length = 573

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 525 GRKPVSTGSGNKTV*IASTLMYL*LDRRQTSVRVMD 632
           GRKP STG+ ++T  ++S+  YL  D +  S R  D
Sbjct: 102 GRKPESTGADHQTKTVSSSDKYLVEDAKSNSSRYDD 137


>At2g18120.1 68415.m02109 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 222

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +2

Query: 479 SNFSLTETCGPRGSAREKACIHGK----REQNGLNC 574
           S+ SLT +C   G+  +K C HG+     + NGL+C
Sbjct: 64  SSRSLTISCQECGNQAKKGCTHGRCRTCCKSNGLHC 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,385,098
Number of Sequences: 28952
Number of extensions: 303261
Number of successful extensions: 624
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)