Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0016
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26790.1 68415.m03213 pentatricopeptide (PPR) repeat-containi...    29   2.7  
At1g13800.1 68414.m01620 pentatricopeptide (PPR) repeat-containi...    29   3.5  
At4g22756.1 68417.m03285 sterol desaturase family protein simila...    27   8.1  

>At2g26790.1 68415.m03213 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 799

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 590 KINCVIVTRCLSCYC 546
           K+NCVIV+  L CYC
Sbjct: 350 KVNCVIVSLILQCYC 364


>At1g13800.1 68414.m01620 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 883

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 590 KINCVIVTRCLSCYC 546
           +INCVIV+  L CYC
Sbjct: 358 RINCVIVSSILQCYC 372


>At4g22756.1 68417.m03285 sterol desaturase family protein similar
           to sterol 4-alpha-methyl-oxidase GI:16973471 from
           [Arabidopsis thaliana]; contains Pfam profile PF01598:
           Sterol desaturase
          Length = 299

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
 Frame = +2

Query: 293 LKQNIELIIVLPWLFWSGT*MKAIKLLYRHRSLMRV*VFNFF---LLILNSVKITMKHFN 463
           L +N+  +  L W  +S T  K+   LY H  L    +F+     L+ + S + T   FN
Sbjct: 14  LSRNLTWLETL-WFDYSAT--KSDYYLYCHNILFLFLIFSLVPLPLVFIESSQSTSDLFN 70

Query: 464 KYKLKPCDQIKTVKRRDNLAQSTKCERD 547
           +YK++P       K +++ +   KC +D
Sbjct: 71  RYKIQP-------KVKNSFSSMFKCYKD 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,636,095
Number of Sequences: 28952
Number of extensions: 171810
Number of successful extensions: 278
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)