Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0015
         (431 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo...   104   3e-23
At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)           101   2e-22
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)            99   1e-21
At3g19400.2 68416.m02460 cysteine proteinase, putative non-conse...    31   0.25 
At3g19400.1 68416.m02461 cysteine proteinase, putative non-conse...    31   0.25 
At4g17250.1 68417.m02594 expressed protein                             28   2.4  

>At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B)
           ribosomal protein L31, Nicotiana glutinosa, U23784
          Length = 119

 Score =  104 bits (249), Expect = 3e-23
 Identities = 44/64 (68%), Positives = 55/64 (85%)
 Frame = +3

Query: 69  KRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGV 248
           + +VTREYT+NLH+RLH   FKK+AP+AIKEIRKFAEK+MGT D+RVD +LNK +WSKG+
Sbjct: 9   EEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIWSKGI 68

Query: 249 RNFP 260
           R  P
Sbjct: 69  RGPP 72



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 293 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 385
           NDDED+  + F+LVT   +P   + GL T+ ++
Sbjct: 84  NDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIE 116


>At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)
          Length = 119

 Score =  101 bits (243), Expect = 2e-22
 Identities = 43/64 (67%), Positives = 54/64 (84%)
 Frame = +3

Query: 69  KRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGV 248
           + ++TREYT+NLH+RLH   FKK+AP+AIKEIRKFAEK MGT D+RVD +LNK +WSKG+
Sbjct: 9   EEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGI 68

Query: 249 RNFP 260
           R  P
Sbjct: 69  RGPP 72



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 293 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 385
           NDDED+  + F+LVT   +P   + GL T+ ++
Sbjct: 84  NDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIE 116


>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
          Length = 119

 Score = 99.1 bits (236), Expect = 1e-21
 Identities = 43/64 (67%), Positives = 52/64 (81%)
 Frame = +3

Query: 69  KRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGV 248
           + +VTREYT+NLH+RLH   FKK+AP AIKEIRKFA K MGT D+RVD +LNK +WSKG+
Sbjct: 9   EEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQIWSKGI 68

Query: 249 RNFP 260
           R  P
Sbjct: 69  RGPP 72



 Score = 29.9 bits (64), Expect = 0.78
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 293 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVDASQ 394
           NDDED+  + F+LVT   +P   + GL T+ ++  +
Sbjct: 84  NDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119


>At3g19400.2 68416.m02460 cysteine proteinase, putative
           non-consensus AT acceptor site at exon 3; contains
           similarity to cysteine protease CYP1 GI:2828252, TDI-65
           GI:5726641 from [Lycopersicon esculentum]
          Length = 290

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +3

Query: 51  KRQISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 230
           +R  +  R++  ++ V   K  +G+G K+R  +  K+  KF ++    PD   +  L +F
Sbjct: 34  ERNETEVRLMYEQWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRF 93


>At3g19400.1 68416.m02461 cysteine proteinase, putative
           non-consensus AT acceptor site at exon 3; contains
           similarity to cysteine protease CYP1 GI:2828252, TDI-65
           GI:5726641 from [Lycopersicon esculentum]
          Length = 362

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +3

Query: 51  KRQISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 230
           +R  +  R++  ++ V   K  +G+G K+R  +  K+  KF ++    PD   +  L +F
Sbjct: 34  ERNETEVRLMYEQWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRF 93


>At4g17250.1 68417.m02594 expressed protein
          Length = 416

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 93  TVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVD 212
           TV   KR   + +KKR   A+K+   + E++ G P ++ D
Sbjct: 169 TVPATKRFLELKYKKRYEFALKQCPSYTERRRGVPKLKED 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,578,768
Number of Sequences: 28952
Number of extensions: 157151
Number of successful extensions: 352
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)