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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0012
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23540.1 68417.m03392 expressed protein probable membrane pro...    28   6.2  

>At4g23540.1 68417.m03392 expressed protein probable membrane
           protein YPL012w, Saccharomyces cerevisiae, PIR2:S59681
          Length = 675

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = +3

Query: 9   DFTLTRLKKFHFKKQSKSTYICTIGGLIAKSDLFQT-----SV*FTEKTVKYKNTAGMLR 173
           D T    + FH+ K++ +  +  +    + ++L QT     +V  TE +  +K   G L 
Sbjct: 170 DATTELERGFHYSKKASTKNMKALAS--SSTELLQTLVDVFTVSGTEISADFKAAIGCLA 227

Query: 174 CTIDNTLLYKIYTYIINK 227
            T+D+++  KI   ++NK
Sbjct: 228 STLDSSVRKKILISLLNK 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,242,583
Number of Sequences: 28952
Number of extensions: 217020
Number of successful extensions: 464
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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