Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0010
         (515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63780.1 68418.m08005 zinc finger (C3HC4-type RING finger) fa...    28   4.3  
At5g08750.1 68418.m01039 zinc finger (C3HC4-type RING finger) fa...    28   4.3  
At1g18960.1 68414.m02359 myb family transcription factor contain...    27   7.5  

>At5g63780.1 68418.m08005 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 367

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 12  YWNIIFYFWYLIRNNW 59
           YW I+F FW+L+   W
Sbjct: 341 YWAILFIFWFLVFGIW 356


>At5g08750.1 68418.m01039 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 363

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 12  YWNIIFYFWYLIRNNW 59
           YW I+F FW+L+   W
Sbjct: 337 YWAILFVFWFLVFGIW 352


>At1g18960.1 68414.m02359 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain;
           contains similarity to transcription factor GI:9759592
           from [Arabidopsis thaliana]
          Length = 307

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -1

Query: 434 IPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINNIREGG 285
           +P K  E++    +  L   L E G    H    PFS +L E  NI  GG
Sbjct: 89  LPGKTEEEVKMFWNTKLKKKLSEMG--IDHVTHRPFSHVLAEYGNINGGG 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,993,408
Number of Sequences: 28952
Number of extensions: 131818
Number of successful extensions: 256
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)