Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0058.Seq
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46320.1 68415.m05761 mitochondrial substrate carrier family ...    31   0.51 
At1g71460.1 68414.m08257 pentatricopeptide (PPR) repeat-containi...    28   6.3  
At3g25850.1 68416.m03220 DC1 domain-containing protein similar t...    27   8.4  
At2g22740.2 68415.m02696 SET domain-containing protein (SUVH6) i...    27   8.4  
At2g22740.1 68415.m02695 SET domain-containing protein (SUVH6) i...    27   8.4  

>At2g46320.1 68415.m05761 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 361

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
 Frame = +2

Query: 2   YNGTCVLS--KRCETLILDYRDRSFPPVCGLRGKEHIVCCTDCELVDNIDNIYLTRR--- 166
           Y G+C L       TL+ D R  S P +C + G   +  C+D +    +D  Y   R   
Sbjct: 58  YQGSCRLGCFDTNSTLVHDLRSNSAPGMCRITGSASV--CSDNQYKGTLDVFYKIIRQEG 115

Query: 167 YSRLEKTNKKS----------WDACIDYVLNIPEYFST 250
           +SRL +    S          +  C DY  NI E F+T
Sbjct: 116 FSRLWRGTNASLTLAIPTVGIYMPCYDYFRNIMEEFTT 153


>At1g71460.1 68414.m08257 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 689

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 152 YLTRRYSRLEKTNKKSWDACID-YVLN 229
           Y  R + RLE+ N K+W A ID YV N
Sbjct: 471 YPIRLFDRLEQRNVKAWTAMIDCYVEN 497


>At3g25850.1 68416.m03220 DC1 domain-containing protein similar to
           unknown protein GB:AAC79144 from [Arabidopsis thaliana]
          Length = 258

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 80  CGLRGKEHIVCCTDCELVDNIDNIYLTR 163
           C + GK +   C +C L+ + D IYL R
Sbjct: 135 CSVEGKRNPYVCLECNLMFHKDCIYLPR 162


>At2g22740.2 68415.m02696 SET domain-containing protein (SUVH6)
           identical to SUVH6 [Arabidopsis thaliana] GI:13517753;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain
          Length = 790

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 62  RSFPPVCGLRGKEHIVCCTDCELVDNI 142
           R FPP CG R  E  + C +  +V+++
Sbjct: 59  RDFPPGCGSRAMEVKIACENGNVVEDV 85


>At2g22740.1 68415.m02695 SET domain-containing protein (SUVH6)
           identical to SUVH6 [Arabidopsis thaliana] GI:13517753;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain
          Length = 790

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 62  RSFPPVCGLRGKEHIVCCTDCELVDNI 142
           R FPP CG R  E  + C +  +V+++
Sbjct: 59  RDFPPGCGSRAMEVKIACENGNVVEDV 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,903,065
Number of Sequences: 28952
Number of extensions: 253251
Number of successful extensions: 708
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)