Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C07f
         (344 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...    59   7e-10
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...    58   2e-09
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...    58   2e-09
At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family prote...    27   2.5  
At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA...    27   2.5  
At5g01940.1 68418.m00113 eukaryotic translation initiation facto...    27   3.4  
At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR...    27   4.4  
At2g24900.1 68415.m02977 hypothetical protein includes At2g24900...    26   5.9  
At1g20300.1 68414.m02534 pentatricopeptide (PPR) repeat-containi...    26   7.7  
At1g05410.1 68414.m00549 expressed protein                             26   7.7  

>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 27/46 (58%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
 Frame = +1

Query: 205 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKR 339
           E+KLF RWS  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KR
Sbjct: 18  EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKR 63


>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 28/52 (53%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
 Frame = +1

Query: 187 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKR 339
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KR
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKR 63


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 28/52 (53%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
 Frame = +1

Query: 187 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKR 339
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KR
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKR 63


>At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family protein
           low similarity to SP|P24640|LIP3_MORSP Lipase 3
           precursor (EC 3.1.1.3) (Triacylglycerol lipase)
           {Moraxella sp}; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 328

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 182 YHKPPTFLKSSFSADGVATMCKSLI 256
           ++KPP ++ S F+ D +  MCK  +
Sbjct: 191 FYKPPIWIPSCFAMDYIHVMCKDYL 215


>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
           family protein low similarity to skinny hedgehog
           [Drosophila melanogaster] GI:15420842; contains Pfam
           profile PF03062: MBOAT family
          Length = 533

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 158 AWLWKPCLYHKPPTFLKSSFSA 223
           +W W  CL+  P   LKS+ SA
Sbjct: 426 SWAWLTCLFFMPEMLLKSASSA 447


>At5g01940.1 68418.m00113 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           SP|P41035 Eukaryotic translation initiation factor 2
           subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
           Pfam profile PF01873: Domain found in IF2B/IF5
          Length = 231

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 221 ADGVATMCKSLICLCRTTFPLKRSTQNIYLIQLAGMHTSVS 343
           A+G  T+C +   LCRT   + R   ++    LA M T VS
Sbjct: 109 AEGTITVCLNFADLCRT---MHRKPDHVMKFLLAQMETKVS 146


>At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1556

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 146 PRQAAWL-WKPC-LYHKPPTFLKSSFSADGVATMCKSLICLCRTTFPLKRSTQNIYLIQL 319
           P +  W+ WK   L + PP  L       GV  + +S +   +T  P KR  +N+ ++ L
Sbjct: 795 PSELKWIQWKGFPLENLPPDILSRQL---GVLDLSESGVRRVKT-LPRKRGDENLKVVNL 850

Query: 320 AGMH 331
            G H
Sbjct: 851 RGCH 854


>At2g24900.1 68415.m02977 hypothetical protein includes At2g24900,
           At5g35040, At3g30500, At4g07690
          Length = 248

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +1

Query: 124 ENWNDDVAEAGSVVVETMSLPQA--ADIPEIKLFGRWSCYDVQVSDMSLQDYI 276
           ENW          ++E M+  +   +D  E  LF R++ YD    D S  DY+
Sbjct: 80  ENWGFVRTTTHKYMIEFMNATEVTHSDPRETVLFNRFTPYDYITEDTSDTDYL 132


>At1g20300.1 68414.m02534 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 537

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 38  KSITTWYYKFCQVTVNKYNNIFRY 109
           K + T   K C+V  + +N IFRY
Sbjct: 381 KVLNTMIKKKCEVNASTFNTIFRY 404


>At1g05410.1 68414.m00549 expressed protein
          Length = 471

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 270 LHFR*REVRKIFTSFSWQV 326
           +HF   +V+K F SFSW +
Sbjct: 96  VHFPEADVQKFFASFSWSI 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,732,320
Number of Sequences: 28952
Number of extensions: 118654
Number of successful extensions: 262
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)