Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C05f
         (403 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31985.1 68417.m04549 60S ribosomal protein L39 (RPL39C)            87   4e-18
At3g02190.1 68416.m00196 60S ribosomal protein L39 (RPL39B) simi...    85   2e-17
At2g25210.1 68415.m03017 60S ribosomal protein L39 (RPL39A)            82   1e-16
At5g27470.1 68418.m03281 seryl-tRNA synthetase / serine--tRNA li...    40   5e-04
At1g27100.1 68414.m03303 expressed protein  contains Pfam profil...    29   1.5  
At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase fa...    27   6.2  
At1g52510.1 68414.m05928 hydrolase, alpha/beta fold family prote...    27   6.2  
At4g15233.1 68417.m02334 ABC transporter family protein similar ...    26   8.2  

>At4g31985.1 68417.m04549 60S ribosomal protein L39 (RPL39C)
          Length = 51

 Score = 87.0 bits (206), Expect = 4e-18
 Identities = 35/45 (77%), Positives = 42/45 (93%)
 Frame = -1

Query: 193 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 59
           K+F+IK+KL KK++QNRPIP W+R+RT NTIRYNAKRRHWRRTKL
Sbjct: 5   KSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKL 49


>At3g02190.1 68416.m00196 60S ribosomal protein L39 (RPL39B) similar
           to ribosomal protein L39 GB:P51424 [Arabidopsis
           thaliana]
          Length = 51

 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 34/45 (75%), Positives = 41/45 (91%)
 Frame = -1

Query: 193 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 59
           K+F+IK+KL KK++QNRPIP W+R+RT N IRYNAKRRHWRRTKL
Sbjct: 5   KSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKL 49


>At2g25210.1 68415.m03017 60S ribosomal protein L39 (RPL39A) 
          Length = 44

 Score = 82.2 bits (194), Expect = 1e-16
 Identities = 33/42 (78%), Positives = 39/42 (92%)
 Frame = -1

Query: 184 IIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 59
           +IK+KL KK++QNRPIP W+R+RT NTIRYNAKRRHWRRTKL
Sbjct: 1   MIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKL 42


>At5g27470.1 68418.m03281 seryl-tRNA synthetase / serine--tRNA
           ligase identical to SP|Q39230 Seryl-tRNA synthetase (EC
           6.1.1.11) (Serine--tRNA ligase) (SerRS) {Arabidopsis
           thaliana}
          Length = 451

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 16/33 (48%), Positives = 25/33 (75%)
 Frame = +1

Query: 301 VLDLDLFRADKDGNPDKIRENQKKRFKDVALXD 399
           +LD++LFR +K  NP+ IRE+Q++RF  V + D
Sbjct: 1   MLDINLFREEKGNNPEIIRESQRRRFASVEIVD 33


>At1g27100.1 68414.m03303 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 519

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 247 LKLSNTSSLVSLVPIRHGKTFIIKRKLAKKLKQNRPIPQW 128
           LKLS   S V   P+R G    ++ +    L+ N  +P W
Sbjct: 309 LKLSRVDSSVEWEPLREGSKIKLRTRSGNYLRGNGGLPPW 348


>At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Mus
           musculus [SP|P70704], {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1213

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 306 EDHVDVINLTQ-INYICRNIL*NYQTRRLSSPSCRFGTGRRLL 181
           E HV+ +   Q + Y   N+L    TR+  S  CRF  GR +L
Sbjct: 549 ESHVEKMGKIQDVAYEILNVLEFNSTRKRQSVVCRFPDGRLVL 591


>At1g52510.1 68414.m05928 hydrolase, alpha/beta fold family protein
           low similarity to SP|P22643 Haloalkane dehalogenase (EC
           3.8.1.5) {Xanthobacter autotrophicus}; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 380

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +2

Query: 2   LTLQGFYYITFNTFTSLQLELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALN 181
           L +QGF   ++    +L+    PS V  L+++++ ++ + P P     +   LFG+F   
Sbjct: 201 LVVQGFLVGSYGLTWALKN---PSKVEKLAILNSPLTVSSPVPGLFKQLRIPLFGEFTCQ 257

Query: 182 N 184
           N
Sbjct: 258 N 258


>At4g15233.1 68417.m02334 ABC transporter family protein similar to
           pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, PDR5-like ABC transporter
           [Spirodela polyrhiza] GI:1514643; contains Pfam profile
           PF00005: ABC transporter
          Length = 1168

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 384 IFKSLLLIFSNFIWITVFIGT 322
           +FKS LLIF  FI +TV++ T
Sbjct: 492 VFKSGLLIFIGFIAMTVYLRT 512


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,121,846
Number of Sequences: 28952
Number of extensions: 152867
Number of successful extensions: 369
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)