Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C04f
         (349 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16470.1 68416.m02101 jacalin lectin family protein contains ...    27   2.6  
At2g34840.1 68415.m04278 coatomer protein epsilon subunit family...    26   6.0  
At4g34900.1 68417.m04949 xanthine dehydrogenase, putative simila...    26   7.9  
At2g30550.2 68415.m03721 lipase class 3 family protein similar t...    26   7.9  
At2g30550.1 68415.m03720 lipase class 3 family protein similar t...    26   7.9  

>At3g16470.1 68416.m02101 jacalin lectin family protein contains
           Pfam profile: PF01419 jacalin-like lectin domain;
           similar to myrosinase-binding protein homolog
           [Arabidopsis thaliana] GI:2997767
          Length = 451

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 219 IIEMDNSRFTFKNTEDLCPDPEAYIQYIHV 308
           I+ +++ + T   TE+   DPE YI Y+ V
Sbjct: 204 IVSLEHGKQTLLGTEEFEIDPEDYITYVKV 233


>At2g34840.1 68415.m04278 coatomer protein epsilon subunit family
           protein / COPE family protein similar to SP|O14579
           Coatomer epsilon subunit (Epsilon-coat protein)
           (Epsilon-COP) from Homo sapiens, SP|Q60445 from
           Cricetulus griseus
          Length = 293

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 244 NLELSISIIKYSVCVRTVVNNELFRCAGGHIFQH 143
           N E +IS +K  +   T+ NN+  R   G IF H
Sbjct: 87  NKESTISSLKEWLADSTIGNNDTLRLIAGIIFMH 120


>At4g34900.1 68417.m04949 xanthine dehydrogenase, putative similar
           to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
           [SP|P47990], from Calliphora vicina [SP|P08793];
           contains Pfam profile PF02738 Aldehyde oxidase and
           xanthine dehydrogenase, molybdopterin binding domain
          Length = 1364

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 75  TPLVPCNLHFNWTLSAVP 22
           TPL PC LH    LS VP
Sbjct: 624 TPLPPCTLHAALVLSKVP 641


>At2g30550.2 68415.m03721 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile PF01764: Lipase
          Length = 529

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 82  TSPRAHLEMFDKFGALHAAAHVERYVHLRSEI 177
           TS    LE FD  G + +   V RY++  S I
Sbjct: 154 TSRFTRLEFFDSLGMIDSGYEVARYLYATSNI 185


>At2g30550.1 68415.m03720 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile PF01764: Lipase
          Length = 464

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 82  TSPRAHLEMFDKFGALHAAAHVERYVHLRSEI 177
           TS    LE FD  G + +   V RY++  S I
Sbjct: 154 TSRFTRLEFFDSLGMIDSGYEVARYLYATSNI 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,564,561
Number of Sequences: 28952
Number of extensions: 135580
Number of successful extensions: 236
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)