Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C01f
         (447 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)             180   4e-46
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)             178   1e-45
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso...   177   4e-45
At3g46050.1 68416.m04983 kelch repeat-containing F-box family pr...    28   3.3  
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU...    28   3.3  
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    27   7.6  
At2g36200.1 68415.m04444 kinesin motor protein-related                 27   7.6  

>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
          Length = 250

 Score =  180 bits (438), Expect = 4e-46
 Identities = 82/119 (68%), Positives = 95/119 (79%)
 Frame = -2

Query: 446 SXRYKLIGGLAVRRACYGVLRFIMEXGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP 267
           S RYKL+GGLAVRRACYGVLRF+ME GA+GCEV+VSGKLR  RAKSMKF DG M+ SG P
Sbjct: 104 SLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQP 163

Query: 266 CNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 90
             +Y++ A RHVLLRQGVLGIKVKIML WD  GK+GPK P PD +++  PKD+ V   P
Sbjct: 164 TKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAP 222


>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
          Length = 248

 Score =  178 bits (434), Expect = 1e-45
 Identities = 80/123 (65%), Positives = 96/123 (78%)
 Frame = -2

Query: 446 SXRYKLIGGLAVRRACYGVLRFIMEXGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP 267
           S RYKL+GGLAVRRACYGVLRF+ME GA+GCEV+VSGKLR  RAKSMKF DG M+ SG P
Sbjct: 104 SLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQP 163

Query: 266 CNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPT 87
             +Y++ A RHVLLRQGVLG+KVKIML WD +GK GP  P PD +++  PK++ V + P 
Sbjct: 164 TKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPA 223

Query: 86  SEV 78
             V
Sbjct: 224 QVV 226


>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
           protein S3a - Xenopus laevis, PIR:R3XL3A
          Length = 249

 Score =  177 bits (430), Expect = 4e-45
 Identities = 79/119 (66%), Positives = 95/119 (79%)
 Frame = -2

Query: 446 SXRYKLIGGLAVRRACYGVLRFIMEXGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP 267
           S RYKL+GGLAVRRACYGVLRF+ME GA+GCEV+VSGKLR  RAKSMKF DG M+ SG P
Sbjct: 104 SLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQP 163

Query: 266 CNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 90
             +Y+++A RHVLLRQGVLGIKVK+ML WD +G +GPK P PD +++  PK+E     P
Sbjct: 164 TKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAP 222


>At3g46050.1 68416.m04983 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 370

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 414 CTSCLLWCSPFHHGXWCP 361
           C   L+WC P     WCP
Sbjct: 248 CEGVLVWCEPEEDRGWCP 265


>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
           Identical to phosphoribosylamine--glycine ligase,
           chloroplast [precursor] SP:P52420 from [Arabidopsis
           thaliana]
          Length = 532

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 368 GARGCEVVVSGKLRGQRAKSMKFVDG 291
           G+ GC+VVV   L G+ A     VDG
Sbjct: 273 GSAGCQVVVEEFLEGEEASFFALVDG 298


>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 977

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 152 KPQPDHILVTEPKDEPVPLEPTSEV 78
           KPQP+ +   EP+ EP P EP  E+
Sbjct: 154 KPQPELVRDLEPEPEPEP-EPEPEI 177


>At2g36200.1 68415.m04444 kinesin motor protein-related 
          Length = 1056

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 186 QHDFDLDS*YSLPEKHMSGSSVDVI--IARVSRVDHESIYKL 305
           QHD ++DS  +  EK ++ +S D+I  I R+S  +  S+ K+
Sbjct: 865 QHDAEVDSARTAAEKDVTKNSDDIIQQIERMSEDEKASVSKI 906


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,913,498
Number of Sequences: 28952
Number of extensions: 182535
Number of successful extensions: 540
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)