Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B09f
         (406 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45240.1 68418.m05552 disease resistance protein (TIR-NBS-LRR...    28   2.7  
At3g42725.1 68416.m04461 expressed protein                             27   4.8  

>At5g45240.1 68418.m05552 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 812

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 372 ATFSCHGCRHFLFIYLISFVRNLRS*VL-IVYFPLCPRTNKS 250
           A F C G + FL IYL+   R+  S VL +    LC    KS
Sbjct: 31  AGFGCRGIKQFLGIYLVILSRDYASSVLCLENLELCCDDKKS 72


>At3g42725.1 68416.m04461 expressed protein
          Length = 202

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 134 VTMLLLFCFYHCFX-RFIVNVLT*QTAGFKRECNRKLS 24
           + +L+L C  HC+  R    +       F+R+CNR++S
Sbjct: 132 IMVLVLACLLHCYWVREFEGLDVESEDSFRRKCNRRVS 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,313,980
Number of Sequences: 28952
Number of extensions: 114769
Number of successful extensions: 233
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)