Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B06f
         (418 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01690.2 68417.m00220 protoporphyrinogen oxidase (PPOX) ident...    29   1.7  
At4g01690.1 68417.m00219 protoporphyrinogen oxidase (PPOX) ident...    29   1.7  
At4g14250.1 68417.m02198 UBX domain-containing protein low simil...    27   3.8  
At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative (CH...    27   5.1  
At3g13310.1 68416.m01676 DNAJ heat shock N-terminal domain-conta...    27   6.7  
At4g01120.1 68417.m00150 G-box binding factor 2 (GBF2) identical...    26   8.9  

>At4g01690.2 68417.m00220 protoporphyrinogen oxidase (PPOX)
           identical to SP|P55826
          Length = 506

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 106 SRCLRALLDEITNRLSSLYTPPPFFFWVSY-RPPLSLKCPQGGVIAHFGKGWP 261
           S  LR L +   N LS LY PP     +SY +  +  +C   G +  FG+  P
Sbjct: 343 SGLLRPLSESAANALSKLYYPPVAAVSISYPKEAIRTECLIDGELKGFGQLHP 395


>At4g01690.1 68417.m00219 protoporphyrinogen oxidase (PPOX)
           identical to SP|P55826
          Length = 537

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 106 SRCLRALLDEITNRLSSLYTPPPFFFWVSY-RPPLSLKCPQGGVIAHFGKGWP 261
           S  LR L +   N LS LY PP     +SY +  +  +C   G +  FG+  P
Sbjct: 343 SGLLRPLSESAANALSKLYYPPVAAVSISYPKEAIRTECLIDGELKGFGQLHP 395


>At4g14250.1 68417.m02198 UBX domain-containing protein low
           similarity to 60S ribosomal protein L2 [Nicotiana
           tabacum] GI:9230281; contains Pfam profile PF00789: UBX
           domain
          Length = 724

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 130 DEITNRLSSLYTPPPFFFW 186
           +E  +RLSSLY PPP  F+
Sbjct: 102 EESDSRLSSLYRPPPSLFF 120


>At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative
           (CHX28) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 732

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 46  ILFFSAPIFSPT*KPL*RELSRCLRALLDEITNRLSSLYT---PPPFFFWVSYRPP 204
           +L+    IF PT KPL R L R  RALL          +T    P F  WV+   P
Sbjct: 190 LLYCFGFIFFPTEKPLARPLHRFFRALLMFCLFLAQVTFTSIVSPIFLNWVNNENP 245


>At3g13310.1 68416.m01676 DNAJ heat shock N-terminal
           domain-containing protein similar to J11 protein
           [Arabidopsis thaliana] GI:9843641; contains Pfam
           profile: PF00226 DnaJ domain
          Length = 157

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 22  CLLPTLRIILFFSAPIFSPT*KPL*RELSRCLR---ALLDEITNRLSSLY 162
           C+LP  R   F+S     PT  P  +  ++ L    A+ + +  R+SSLY
Sbjct: 17  CILPQQRTARFYSGTARFPTGAPSFKASAQTLNAEPAVTESVRRRVSSLY 66


>At4g01120.1 68417.m00150 G-box binding factor 2 (GBF2) identical to
           G-box binding factor 2 (GBF2) SP:P42775 from
           [Arabidopsis thaliana];contains Pfam profile: PF00170
           bZIP transcription factor
          Length = 360

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
 Frame = +1

Query: 142 NRLSSLYTPPPFFFWVS-------YRPPLSLKCPQGGVIAHFG 249
           + L+  + PPP+  W S       Y  P    CP GGV AH G
Sbjct: 53  SNLAPGHAPPPYM-WASPSPMMAPYGAPYPPFCPPGGVYAHPG 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,240,538
Number of Sequences: 28952
Number of extensions: 158746
Number of successful extensions: 251
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)