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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B05f
         (356 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   211   9e-56
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   211   9e-56
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   211   1e-55
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    29   1.2  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   1.6  
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ...    28   2.1  
At5g48310.1 68418.m05968 expressed protein                             27   2.8  
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ...    27   2.8  
At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative ...    27   3.7  
At1g53180.1 68414.m06027 expressed protein                             27   3.7  
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein...    27   4.9  
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein...    27   4.9  
At1g19510.1 68414.m02430 myb family transcription factor contain...    27   4.9  
At4g30110.1 68417.m04281 ATPase E1-E2 type family protein / halo...    26   6.4  
At3g59190.1 68416.m06599 F-box family protein contains F-box dom...    26   6.4  
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ...    26   6.4  
At3g19680.1 68416.m02493 expressed protein                             26   6.4  
At4g20110.1 68417.m02943 vacuolar sorting receptor, putative sim...    26   8.5  
At1g09900.1 68414.m01114 pentatricopeptide (PPR) repeat-containi...    26   8.5  

>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  211 bits (516), Expect = 9e-56
 Identities = 93/118 (78%), Positives = 104/118 (88%)
 Frame = +1

Query: 1   GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 180
           GRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +S
Sbjct: 2   GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVS 61

Query: 181 SEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAF 354
           SEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAF
Sbjct: 62  SEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAF 119


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  211 bits (516), Expect = 9e-56
 Identities = 93/118 (78%), Positives = 104/118 (88%)
 Frame = +1

Query: 1   GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 180
           GRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +S
Sbjct: 2   GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVS 61

Query: 181 SEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAF 354
           SEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAF
Sbjct: 62  SEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAF 119


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  211 bits (515), Expect = 1e-55
 Identities = 93/118 (78%), Positives = 104/118 (88%)
 Frame = +1

Query: 1   GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 180
           GRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +S
Sbjct: 2   GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVS 61

Query: 181 SEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAF 354
           SEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAF
Sbjct: 62  SEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAF 119


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 181 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 312
           S+A+  G  C  C+ +  K CG+    I+   HP H +++     C
Sbjct: 65  SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 178 SSEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINK 300
           S E++  G  C  C+ ++ K CG+    I    HP H + +N+
Sbjct: 369 SLESVTDGFYCKSCDIFIHKKCGESSGIIDHSSHPDHTLELNR 411


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 157  SDEYEQLSSEALEAGRICCNKYLV 228
            SDEY +  SEA   GR   N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454


>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 578

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 205 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 294
           + C K   K C +  F I    HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136


>At5g48310.1 68418.m05968 expressed protein
          Length = 1156

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 174 LFIFVGHQVHAQWKVVNGRSLLTQIEDTDLGIRYTPTEPRFRIR-FIFAVPVASCWPAP 1
           LF+ + +++ A  K+ N   L + I+  +L      T+   R+R F+ AVP  SC P P
Sbjct: 736 LFLIISNEIEADIKITNEHVLPSSIDLANLAAVVYSTQLCHRLRAFLSAVP-PSC-PLP 792


>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 342

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 109 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 282
           KK   +   PL + +++ EYE         GR CCN    ++CG   +    ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308


>At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative
           contains similarity to CHP-rich zinc finger protein
          Length = 305

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 211 CNKYLVKNCGKDQFHIRMRLHPFHVIRINKML 306
           C K   K C +    I+   HPFH +R+   L
Sbjct: 143 CQKNFHKECVQSPLEIKHPSHPFHSLRLYSYL 174


>At1g53180.1 68414.m06027 expressed protein
          Length = 358

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 7   RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 111
           R +R  RYC + PYP S      P+ K+   D+GK
Sbjct: 27  RRSRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60


>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 284

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 24/62 (38%), Positives = 30/62 (48%)
 Frame = -2

Query: 298 Y*CG*RGKGEVSCGYGTDPFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRS 119
           Y CG RG  E +C     P ++   G+Y SR   P K  S +   RR+PS     SR RS
Sbjct: 124 YRCGERGHIERNCKNSPSPKKARQGGSY-SR--SPVK--SRSPRRRRSPSRSRSYSRGRS 178

Query: 118 LS 113
            S
Sbjct: 179 YS 180


>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 243

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 24/62 (38%), Positives = 30/62 (48%)
 Frame = -2

Query: 298 Y*CG*RGKGEVSCGYGTDPFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRS 119
           Y CG RG  E +C     P ++   G+Y SR   P K  S +   RR+PS     SR RS
Sbjct: 83  YRCGERGHIERNCKNSPSPKKARQGGSY-SR--SPVK--SRSPRRRRSPSRSRSYSRGRS 137

Query: 118 LS 113
            S
Sbjct: 138 YS 139


>At1g19510.1 68414.m02430 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 100

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 73  VPDPKIRIFDLGKKRATVDDFPL 141
           VP PK +  D+G K   +DDF L
Sbjct: 69  VPLPKYKTVDVGSKSRGIDDFDL 91


>At4g30110.1 68417.m04281 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux pump protein from Geobacillus
           stearothermophilus [GI:16753175], cadmium resistance
           protein B from Staphylococcus aureus [GI:14020985]
          Length = 951

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 178 SSEALEAGRICCNKYLVKNCGKDQFHIR 261
           S E    G  CC  Y  ++C  D  H R
Sbjct: 911 SRERCHHGSNCCRSYAKESCSHDHHHTR 938


>At3g59190.1 68416.m06599 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 388

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = +1

Query: 112 KRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNK 219
           K A   DF + V  V   Y  LSSEALE    CC K
Sbjct: 297 KGANAADFMMGVCNVKTMY--LSSEALEVLTFCCKK 330


>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 681

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 169 EQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 294
           E  +S +  A   C NK+  K C +    I+   HPFH +R+
Sbjct: 130 ESKTSRSYYACLECGNKFH-KQCVESPLEIKHPSHPFHSLRL 170


>At3g19680.1 68416.m02493 expressed protein
          Length = 491

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 161 SDTKCTHSGKSSTVALFLPKSKIRILGS 78
           S+T+C+ SG  STVA     SK +I  S
Sbjct: 69  SETRCSSSGNVSTVAACFSLSKAQIEAS 96


>At4g20110.1 68417.m02943 vacuolar sorting receptor, putative
           similar to BP-80 vacuolar sorting receptor [Pisum
           sativum] GI:1737222; identical to vacuolar sorting
           receptor-like protein (GI:2827665) [Arabidopsis
           thaliana]
          Length = 625

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 28  YCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDE 165
           +CK++     R+C   P+   R    GK     +   LCVH V++E
Sbjct: 248 HCKSQCINHGRYCAPDPEDNFREGYEGKDVVLENLRQLCVHRVANE 293


>At1g09900.1 68414.m01114 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 598

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 166 YEQLSSEALEAGRICCNKYLVKNCGKDQ 249
           YE ++ EALE     CNK L+K    +Q
Sbjct: 566 YEGMAKEALELLNELCNKGLMKKSSAEQ 593


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,762,928
Number of Sequences: 28952
Number of extensions: 184668
Number of successful extensions: 625
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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