Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301A03f
(314 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 92 6e-20
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 87 2e-18
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 32 0.093
At5g27500.1 68418.m03287 hypothetical protein hypothetical prote... 31 0.12
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 29 0.50
At5g07220.1 68418.m00823 BAG domain-containing protein contains ... 29 0.65
At3g05130.1 68416.m00557 expressed protein ; expression supporte... 29 0.65
At5g58320.2 68418.m07301 kinase interacting protein-related low ... 29 0.87
At5g41780.1 68418.m05087 myosin heavy chain-related weak similar... 29 0.87
At2g30500.1 68415.m03715 kinase interacting family protein simil... 28 1.1
At5g06850.1 68418.m00774 C2 domain-containing protein contains I... 28 1.5
At4g27500.1 68417.m03950 expressed protein non-consensus GA dono... 28 1.5
At3g53540.1 68416.m05912 expressed protein 28 1.5
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 28 1.5
At1g30960.1 68414.m03791 GTP-binding protein (ERG) identical to ... 27 2.0
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 27 2.6
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 27 2.6
At3g04830.2 68416.m00524 expressed protein 27 2.6
At3g04830.1 68416.m00523 expressed protein 27 2.6
At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 27 3.5
At1g55545.1 68414.m06357 nucleoporin-related similar to nucleopo... 27 3.5
At5g38840.1 68418.m04698 forkhead-associated domain-containing p... 26 4.6
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 26 4.6
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 26 4.6
At1g29000.1 68414.m03546 heavy-metal-associated domain-containin... 26 4.6
At5g28220.1 68418.m03417 expressed protein predicted proteins, A... 26 6.1
At1g23700.1 68414.m02992 protein kinase family protein contains ... 26 6.1
At1g12620.1 68414.m01466 pentatricopeptide (PPR) repeat-containi... 26 6.1
At4g04110.1 68417.m00581 Toll-Interleukin-Resistance (TIR) domai... 25 8.1
At3g06430.1 68416.m00741 pentatricopeptide (PPR) repeat-containi... 25 8.1
At3g05270.1 68416.m00575 expressed protein similar to endosome-a... 25 8.1
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 25 8.1
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ... 25 8.1
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 92.3 bits (219), Expect = 6e-20
Identities = 42/88 (47%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
Frame = +2
Query: 50 EDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKV 229
ED +++ M T++I TRLLDNEI+I+K + R + E + +KIKEN EKIK+
Sbjct: 7 EDTSSFEEDQLASMSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQEKIKL 66
Query: 230 NKTLPYLVSNVIELLDVDPQEE-EEDGA 310
NK LPYLV N++E+L+++P+++ EEDGA
Sbjct: 67 NKQLPYLVGNIVEILEMNPEDDAEEDGA 94
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 87.4 bits (207), Expect = 2e-18
Identities = 40/80 (50%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
Frame = +2
Query: 74 EEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLV 253
+++ M TD+I +RLL NEI+I+K E R + +L++ +KIKEN EKIK+NK LPYLV
Sbjct: 14 DQLASMTTDDIGRASRLLANEIRILKEESQRTNLDLESVKEKIKENQEKIKLNKQLPYLV 73
Query: 254 SNVIELLDVDPQEE-EEDGA 310
N++E+L++ P+++ EEDGA
Sbjct: 74 GNIVEILEMSPEDDAEEDGA 93
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 31.9 bits (69), Expect = 0.093
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +2
Query: 38 KSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHEL-QAQNDKIKENT 214
++I +GEEAL E+ DE + T L + + S + +S L Q ++D + EN
Sbjct: 775 ETICGEGEEALKEDKSPTVVDEALEDTALPEANLSDPSSPTVVVSKVLTQLKDDILAENV 834
Query: 215 EKIKVNKTLPYLVSNVIELLDVDPQEEE 298
KI +P V+ L D EE+
Sbjct: 835 SKIPEKVAVP---EEVLTQLKDDVLEEK 859
>At5g27500.1 68418.m03287 hypothetical protein hypothetical proteins
- Arabidopsis thaliana
Length = 187
Score = 31.5 bits (68), Expect = 0.12
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +2
Query: 35 DKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENT 214
D S W++ ++ + + V ++++ ++ NEI +SEV I +EL A ++KE+
Sbjct: 47 DPSSWKNKKDWVEDAVYE-EVEDVLPNLGIMANEIVKARSEVNEIVNELSASIQELKEDA 105
Query: 215 --EKIKVNK 235
K+++ K
Sbjct: 106 MCSKMEIRK 114
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 715
Score = 29.5 bits (63), Expect = 0.50
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +2
Query: 131 NEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDG 307
N+I IM S++ R L+A D+ K EK+ ++ + ++SN + + D +EE G
Sbjct: 577 NKIIIMISDLDRRVESLEAFKDEQKAKEEKVHIDNCV--ILSNTMITRNQDEMNQEEAG 633
>At5g07220.1 68418.m00823 BAG domain-containing protein contains
Pfam:PF02179 BAG domain
Length = 303
Score = 29.1 bits (62), Expect = 0.65
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Frame = +2
Query: 62 EALSEEVLRMPTDEIVSRTRLLDNEIKIM-KSEVMRISHELQAQND-KIKENTEKIKVNK 235
E L ++LR+ D I++ D ++K+M K +V R+ ++A + K+K + +K++VNK
Sbjct: 176 EMLMNQLLRL--DAIIA-----DGDVKLMRKMQVQRVQKYVEALDLLKVKNSAKKVEVNK 228
Query: 236 TLPYLVSNVI-----ELLDVDPQEEEE 301
++ + +LL +EEEE
Sbjct: 229 SVRHKPQTQTRFEQRDLLSFVEEEEEE 255
>At3g05130.1 68416.m00557 expressed protein ; expression supported
by MPSS
Length = 634
Score = 29.1 bits (62), Expect = 0.65
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 131 NEIKIMKSEVMRISHELQAQNDKIKENTEKI-KVNKTLPYLVSNVIELLDVDPQEE 295
NE++I+K E + EL+ + DK+ E + K K L LV + + LD ++E
Sbjct: 267 NEMEIVKIEQKGVIEELERKLDKLNETVRSLTKEEKVLRDLVIGLEKNLDESMEKE 322
Score = 29.1 bits (62), Expect = 0.65
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = +2
Query: 35 DKSIWEDGE--EALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKE 208
DK++ E+ E L EVL+ ++++V++T ++KI + + ++L++Q++ +K
Sbjct: 445 DKALDEEKRNGEDLKAEVLK--SEKMVAKTLEELEKVKIERKSLFSAKNDLESQSESLK- 501
Query: 209 NTEKIKVNKTL 241
+E +K+ K L
Sbjct: 502 -SENVKLEKEL 511
>At5g58320.2 68418.m07301 kinase interacting protein-related low
similarity to kinase interacting protein 1 [Petunia
integrifolia] GI:13936326
Length = 558
Score = 28.7 bits (61), Expect = 0.87
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +2
Query: 50 EDGEEALSE-EVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIK 226
E+ E+ SE EVL + E L ++ ++SE+ R+ E++A++D+ E ++++
Sbjct: 447 EEEEKLKSEIEVLTLEKVEKGRCIETLSRKVSELESEISRLGSEIKARDDRTMEMEKEVE 506
>At5g41780.1 68418.m05087 myosin heavy chain-related weak similarity
to M protein, serotype 5 precursor (SP:P02977)
{Streptococcus pyogenes} and to Myosin heavy chain,
non-muscle (SP:Q99323) (Zipper protein) (Myosin II)
{Drosophila melanogaster}
Length = 537
Score = 28.7 bits (61), Expect = 0.87
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +2
Query: 98 DEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKI 223
DEI +++ L+ ++K + + R+S E++ Q +KE + I
Sbjct: 255 DEIEDKSKKLEYQVKEQEDIIQRLSMEIKDQKKLLKEQKDAI 296
>At2g30500.1 68415.m03715 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 517
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/62 (20%), Positives = 33/62 (53%)
Frame = +2
Query: 50 EDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKV 229
EDG+EAL + + + ++ +LL + + + + H++ ++KE EK+++
Sbjct: 156 EDGDEALIRRMAELELELQETKQKLLLQQESVDGDNNVDLLHKITTYEGELKEANEKMRM 215
Query: 230 NK 235
++
Sbjct: 216 HE 217
>At5g06850.1 68418.m00774 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 669
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 188 QNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 301
Q + ++ K+ V+ L YL NVIE DV+P + +
Sbjct: 74 QGEGVQSVRSKVYVSPKLWYLRVNVIEAQDVEPSDRSQ 111
>At4g27500.1 68417.m03950 expressed protein non-consensus GA donor
splice site at exon 6
Length = 612
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/59 (22%), Positives = 31/59 (52%)
Frame = +2
Query: 59 EEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNK 235
++ ++ +R E + + + ++K+M + + + E QA + +I E +EK+K K
Sbjct: 218 DKVIANAAMRAKIKESMGQKDDIQGQVKLMGAGLDGVKKERQAISARINELSEKLKATK 276
>At3g53540.1 68416.m05912 expressed protein
Length = 924
Score = 27.9 bits (59), Expect = 1.5
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +2
Query: 2 NHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISH-E 178
+HNI MATT + S++ED E+ S + T + R L D + + + ++S
Sbjct: 793 DHNIVMATTPVEPSLFEDLEKKYSS----VKTSTRLERKLLFDQISREVLHMLKQLSDPH 848
Query: 179 LQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 301
++ K+ + K+ +TL LV+ E EE+E
Sbjct: 849 PWVKSTKVCPKWDANKIQETLRDLVTRKDEKPSKYDVEEKE 889
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/72 (18%), Positives = 40/72 (55%)
Frame = +2
Query: 77 EVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVS 256
EVL+ ++ S+ + + +++I+++++ + +L+ ++ E+++ ++S
Sbjct: 1042 EVLQKEVNDFQSKENVTEKQVEILETQMEELQDKLRDTTMDNEQLQEQLRGKDMELLIIS 1101
Query: 257 NVIELLDVDPQE 292
N +ELL + +E
Sbjct: 1102 NEMELLTSELEE 1113
>At1g30960.1 68414.m03791 GTP-binding protein (ERG) identical to
GTP-binding protein ERG SP:O82653 from [Arabidopsis
thaliana]
Length = 437
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 38 KSIWEDGEEALSEEVLRMPTDEIVSRTRLLDN 133
K WE+ +SEEVL+ + E+V R RLLD+
Sbjct: 330 KKPWEEDAFTMSEEVLKNISLEVV-RERLLDH 360
>At4g14760.1 68417.m02271 M protein repeat-containing protein contains
Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 143 IMKSEVMRISHELQAQNDKIKENTEKIK-VNKTLPYLVSNVIEL 271
I++++V +S + ND++ T KIK + +T+ +L S V EL
Sbjct: 1252 ILENKVNELSGVCENLNDEVVTKTTKIKQMKETVGFLESQVTEL 1295
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Frame = +2
Query: 32 EDKSIWEDGEEALS---EEVLRMPTD-EIVSRTRLLDNEIKIMKS---EVMRISHELQAQ 190
E+K+IW E+AL+ EE +R+ + +I S ++ + E K ++S E + ++ L+
Sbjct: 1010 EEKAIWSSKEKALTEAVEEKIRLYKNIQIESLSKEMSEEKKELESCRLECVTLADRLRCS 1069
Query: 191 NDKIKENTE 217
+ K++ E
Sbjct: 1070 EENAKQDKE 1078
>At3g04830.2 68416.m00524 expressed protein
Length = 299
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 20 ATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRL 124
A LE K +WE+ E+A + + P D+++ + ++
Sbjct: 101 ALLLEAKGMWEEAEKAYTSLLEDNPLDQVIHKRKV 135
>At3g04830.1 68416.m00523 expressed protein
Length = 303
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 20 ATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRL 124
A LE K +WE+ E+A + + P D+++ + ++
Sbjct: 105 ALLLEAKGMWEEAEKAYTSLLEDNPLDQVIHKRKV 139
>At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 448
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 191 NDKIKENTEKI-KVNKTLPYLVSNVIELLDVDPQEEEED 304
N+ KE +EK+ V+++ L SN + ++ + +EEEED
Sbjct: 50 NEVTKEQSEKMMSVSESNGGLDSNAVVTINQEEEEEEED 88
>At1g55545.1 68414.m06357 nucleoporin-related similar to nucleoporin
CAN [Xenopus laevis] gi|5764080|emb|CAB53357
Length = 824
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +2
Query: 56 GEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNK 235
G A S+ L +D + T L+++++ SE + + QND+ NTEK +
Sbjct: 427 GRPASSDTDLASSSDIEDAYTPLIEDDLSKQSSEKHQ-QLNIAVQNDQKHLNTEKFSTEQ 485
Query: 236 TLP 244
LP
Sbjct: 486 RLP 488
>At5g38840.1 68418.m04698 forkhead-associated domain-containing
protein / FHA domain-containing protein related to
adaptor protein kanadaptin [Homo sapiens]
gi|13562130|gb|AAK29177
Length = 735
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 92 PTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIK 226
PT E V + L E+KI KSE + ++ + N K K
Sbjct: 487 PTGEEVKKRELKSQELKIKKSETPSVEKKINIPLKQADPNEHKEK 531
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 29 LEDKSIWEDGEEALSEEVLRM 91
+EDKS W D EE S + + M
Sbjct: 591 MEDKSYWTDNEEEESRDTISM 611
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 29 LEDKSIWEDGEEALSEEVLRM 91
+EDKS W D EE S + + M
Sbjct: 610 MEDKSYWTDNEEEESRDTISM 630
>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 287
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +2
Query: 158 VMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQE 292
V + +L+ K+K E +K++K + +EL+ P E
Sbjct: 42 VQNVDFDLEKNEIKVKGKIEVVKIHKQIEKWSKKKVELISPKPSE 86
>At5g28220.1 68418.m03417 expressed protein predicted proteins,
Arabidopsis thaliana, D.melanogaster, C.elegans and
S.pombe
Length = 316
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 20 ATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRL 124
A LE K +W + EEA + + P D+ + + R+
Sbjct: 118 ALLLEAKGLWGEAEEAYASLLEDNPLDQAIHKRRV 152
>At1g23700.1 68414.m02992 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 473
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +2
Query: 32 EDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKEN 211
E+K+ G + E+V + + ++ L N + ++V+ I + QND +EN
Sbjct: 298 EEKAKLVKGVDGNKEKVSQENVEALLMEPASLVNPVSCDTAQVLPILQNILIQNDIQREN 357
Query: 212 TEKI 223
E +
Sbjct: 358 VEAL 361
>At1g12620.1 68414.m01466 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 621
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 47 WEDGEEALSEEVLRMPTDEIVSRTRLLDNEIK 142
W+DG + L + + R T ++V+ + L+D +K
Sbjct: 298 WDDGAKLLRDMIKRKITPDVVAFSALIDCFVK 329
>At4g04110.1 68417.m00581 Toll-Interleukin-Resistance (TIR)
domain-containing protein domain signature TIR exists,
suggestive of a disease resistance protein.
Length = 239
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 229 DLDFLRVFFNFIVLSLQLVRDPHHFALHY 143
DL F R+ F+ LSL H +LHY
Sbjct: 8 DLTFKRIAAQFLTLSLIRFSKKSHSSLHY 36
>At3g06430.1 68416.m00741 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 486
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 39 SQFGRMARKLSVRKFFACQLMKS*VEPDFWTM 134
S +GR+ R + K + L+ + +PD WTM
Sbjct: 238 SGYGRVGRFDQMEKVLSDMLVSTACKPDVWTM 269
>At3g05270.1 68416.m00575 expressed protein similar to
endosome-associated protein (EEA1) (GI:1016368) [Homo
sapiens]; similar to smooth muscle myosin heavy chain
(GI:4417214) [Homo sapiens; contains Pfam profile
PF05911: Plant protein of unknown function (DUF869)
Length = 615
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/72 (25%), Positives = 38/72 (52%)
Frame = +2
Query: 14 TMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQN 193
+MAT++ D + +D E E++ +P E + + E++ + V ++ HEL+
Sbjct: 296 SMATSV-DIGLMDDFLEM--EKLAALPHSEPGRKHSESNKELEKSNAHVNQLKHELKTSL 352
Query: 194 DKIKENTEKIKV 229
+I E EK+++
Sbjct: 353 RRISELEEKVEM 364
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +2
Query: 116 TRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQ 289
TR + + K+MKS+ + + EL+ D K+K++ P++ + V ELL ++ +
Sbjct: 15 TRFSNKQAKLMKSQ--KFAPELENLVD-----ITKVKMDVMKPWIATRVTELLGIEDE 65
>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
[Arabidopsis thaliana]
Length = 1576
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 77 EVLRMPTDEIVSRTRLLD 130
EV+RMP DE+ + ++LD
Sbjct: 718 EVMRMPVDELCLQVKMLD 735
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,075,902
Number of Sequences: 28952
Number of extensions: 79990
Number of successful extensions: 375
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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