Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0075.Seq
         (578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15230.1 68417.m02333 ABC transporter family protein similar ...    29   1.7  
At1g79570.1 68414.m09276 protein kinase family protein low simil...    29   2.2  
At5g23470.1 68418.m02754 NLI interacting factor (NIF) family pro...    29   3.0  
At5g42520.1 68418.m05176 expressed protein                             27   9.0  
At3g55540.1 68416.m06167 nuclear transport factor 2 (NTF2) famil...    27   9.0  

>At4g15230.1 68417.m02333 ABC transporter family protein similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, PDR5-like ABC transporter
            [Spirodela polyrhiza] GI:1514643; contains Pfam profile
            PF00005: ABC transporter
          Length = 1326

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 215  LFALFLIPYHKWPGLQLYHYLLQPDSKFLVSFLPSSY 105
            LFA F+IP  K P   ++ Y L P S  L   L S Y
Sbjct: 1229 LFAGFVIPKQKIPKWWIWMYYLSPTSWVLEGLLSSQY 1265


>At1g79570.1 68414.m09276 protein kinase family protein low
           similarity to EDR1 [Arabidopsis thaliana] GI:11127925
          Length = 1248

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
 Frame = -3

Query: 432 LHRSFNPDSCQEFHVTRGFVNFLQTFNSIHVN-EFQHVFPCFNFDIMAQFYVVDVRWNFE 256
           LH+  NPD   +  V  G    +   N  HVN    HV P     +     ++D+   F 
Sbjct: 723 LHKIVNPDDANKNRVVNGADTEIGVSNLSHVNAAMSHVIPEEQASLQGDI-LIDINDRFP 781

Query: 255 S*FF--LKSAAVRSDAFCIIPNP 193
             F   + S A+  D   + P P
Sbjct: 782 RDFLSEIFSQAISEDTSTVRPYP 804


>At5g23470.1 68418.m02754 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 302

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/32 (34%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +1

Query: 211 KSIRPYSSGFEEKSAFKIPPYV-DYVKLCHDV 303
           K I+ +++GF E+S  K+ P+V  ++K C+++
Sbjct: 121 KDIKRFNTGFPEESLIKLRPFVHQFLKECNEM 152


>At5g42520.1 68418.m05176 expressed protein
          Length = 342

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 59  KMVTDLSLHTDFLMRDKNLAKMTRGTYYQAGGDNDRAV---DPAICDKGLGIMQKASDLT 229
           K V  +    D  ++++NLA   +     A  + D A    D AI ++   IM++ S LT
Sbjct: 29  KQVMSIIAERDAAIQERNLAISEKKA---AVAERDMAFLQRDTAIAERNNAIMERDSALT 85

Query: 230 AADLRKNQL 256
           A   R+N +
Sbjct: 86  ALQYRENSM 94


>At3g55540.1 68416.m06167 nuclear transport factor 2 (NTF2) family
           protein contains similarity to Swiss-Prot:Q9P926 nuclear
           transport factor 2 (NTF-2) [Candida albicans]
          Length = 334

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +1

Query: 280 YVKLCHDVEIKTWKDMLKFIDM---DRIESLQEIYETPG-DVEL 399
           YV  CH+     + D+L+++D+   D +ES  +    P  DVEL
Sbjct: 267 YVTRCHNGSYVIYNDILRYVDVTPRDTLESSSQSAAKPSTDVEL 310


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,050,279
Number of Sequences: 28952
Number of extensions: 277446
Number of successful extensions: 703
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)