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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0040.Seq
         (347 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   131   1e-31
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   126   5e-30
At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1) i...    27   3.4  
At5g37210.1 68418.m04468 DC1 domain-containing protein contains ...    26   6.0  
At4g19030.1 68417.m02804 major intrinsic family protein / MIP fa...    26   6.0  
At2g21650.1 68415.m02575 myb family transcription factor contain...    26   6.0  
At1g32400.2 68414.m03998 senescence-associated family protein co...    26   6.0  
At1g32400.1 68414.m03997 senescence-associated family protein co...    26   6.0  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  131 bits (317), Expect = 1e-31
 Identities = 64/114 (56%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
 Frame = +3

Query: 3   RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTG 179
           RD  HKRRATGGK+   RKKRKYE+GR  ANT+L   + +  +R RGGN K+RALRLDTG
Sbjct: 5   RDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTG 64

Query: 180 NFSWGSECSTRKTRIIDVVYNASNNNWCVQRPLSRMQLX**MQLHSGSWYESHY 341
           N+SWGSE +TRKTR++DVVYNASNN     + L +  +          WY SHY
Sbjct: 65  NYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHY 118


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  126 bits (303), Expect = 5e-30
 Identities = 60/85 (70%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
 Frame = +3

Query: 3   RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTG 179
           RD  HKRRATGGK+   RKKRKYELGR  ANT+L   + +  +R RGGN K+RALRLDTG
Sbjct: 5   RDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTG 64

Query: 180 NFSWGSECSTRKTRIIDVVYNASNN 254
           NFSWGSE  TRKTRI+DV YNASNN
Sbjct: 65  NFSWGSEAVTRKTRILDVAYNASNN 89



 Score = 35.1 bits (77), Expect = 0.013
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = +2

Query: 257 LVRTKTLVKNAIXVVDATPFRQ 322
           LVRT+TLVK+AI  VDA PF+Q
Sbjct: 91  LVRTQTLVKSAIVQVDAAPFKQ 112


>At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1)
           identical to Swiss-Prot:Q9SWI1 phytochrome kinase
           substrate 1 [Arabidopsis thaliana]
          Length = 439

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 45  APIRKKRKYELGRPAANTRLGPQRIHSVRSRGGN 146
           +P+R+ R  ++ R     +  PQR  S  S GGN
Sbjct: 339 SPVRRNRPTQIPRIPITAKSAPQRRKSSSSSGGN 372


>At5g37210.1 68418.m04468 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 625

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -3

Query: 213 CELNIPIPKRSYRCPDAAHGT*YFHHVNERSGYAEDRAWCLQRDALTHTSSSCV 52
           CE  I   KR Y C +    T + + +     Y +  +W L +  L  T S C+
Sbjct: 568 CEGEIDPKKRFYMCDEYCCVTLHINCMLGADKYMDPGSWWLYKGNLDGTCSGCM 621


>At4g19030.1 68417.m02804 major intrinsic family protein / MIP
           family protein contains Pfam profile: MIP PF00230;
           identical to cDNA NLM1 protein GI:2677613
          Length = 296

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 85  PLQTPGSVLSVSTPFVH--VVEILSTVRCVWTPVTSL 189
           PL+   S+LSVS PF+   + E L T   V+T   S+
Sbjct: 39  PLKKQDSLLSVSVPFLQKLIAEFLGTYFLVFTGCASV 75


>At2g21650.1 68415.m02575 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA-binding domain
          Length = 101

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 6   DHWHK-RRATGGKRAPIRKKRKYEL 77
           D WH   RA GGK  P   KR+Y+L
Sbjct: 35  DRWHNVARAVGGK-TPEEAKRQYDL 58


>At1g32400.2 68414.m03998 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 186 SWGSECSTRKTRIIDVVYNASNNNWCVQR 272
           SW  E  + +T   D +YN    NW + R
Sbjct: 137 SWRDELPSDRTGNFDTIYNFLRENWKIVR 165


>At1g32400.1 68414.m03997 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 186 SWGSECSTRKTRIIDVVYNASNNNWCVQR 272
           SW  E  + +T   D +YN    NW + R
Sbjct: 137 SWRDELPSDRTGNFDTIYNFLRENWKIVR 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,554,831
Number of Sequences: 28952
Number of extensions: 180066
Number of successful extensions: 418
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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