SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0028.Seq
         (329 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26480.1 68414.m03229 14-3-3 protein GF14 iota (GRF12) identi...    44   2e-05
At1g22300.3 68414.m02790 14-3-3 protein GF14 epsilon (GRF10) ide...    40   3e-04
At1g22300.2 68414.m02789 14-3-3 protein GF14 epsilon (GRF10) ide...    40   3e-04
At1g22300.1 68414.m02788 14-3-3 protein GF14 epsilon (GRF10) ide...    40   3e-04
At3g02520.1 68416.m00240 14-3-3 protein GF14 nu (GRF7) identical...    40   5e-04
At1g78300.1 68414.m09125 14-3-3 protein GF14 omega (GRF2) identi...    40   5e-04
At1g35160.1 68414.m04360 14-3-3 protein GF14 phi (GRF4) identica...    38   0.002
At5g38480.1 68418.m04651 14-3-3 protein GF14 psi (GRF3) (RCI1) i...    37   0.003
At1g34760.1 68414.m04323 14-3-3 protein GF14 omicron (GRF11) ide...    37   0.003
At5g16050.1 68418.m01876 14-3-3 protein GF14 upsilon (GRF5) iden...    37   0.004
At2g42590.1 68415.m05270 14-3-3 protein GF14 mu (GRF9) identical...    36   0.005
At4g09000.1 68417.m01487 14-3-3-like protein GF14 chi /  general...    35   0.011
At5g10450.1 68418.m01211 14-3-3 protein GF14 lambda (GRF6) (AFT1...    33   0.035
At1g78220.1 68414.m09115 14-3-3 protein GF14 pi (GRF13) similar ...    33   0.035
At5g65430.2 68418.m08229 14-3-3 protein GF14 kappa (GRF8) identi...    33   0.046
At5g65430.1 68418.m08228 14-3-3 protein GF14 kappa (GRF8) identi...    33   0.046
At1g60640.1 68414.m06826 expressed protein                             29   1.00 
At5g04980.1 68418.m00527 endonuclease/exonuclease/phosphatase fa...    28   1.7  
At1g22290.1 68414.m02787 14-3-3 protein GF14, putative (GRF10) s...    28   1.7  
At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transfera...    27   2.3  
At1g18180.1 68414.m02260 expressed protein                             27   3.0  
At2g15290.1 68415.m01744 expressed protein                             27   4.0  
At4g16960.1 68417.m02558 disease resistance protein (TIR-NBS-LRR...    26   7.0  
At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR...    26   7.0  
At3g26140.1 68416.m03261 glycosyl hydrolase family 5 protein / c...    25   9.3  

>At1g26480.1 68414.m03229 14-3-3 protein GF14 iota (GRF12) identical
           to 14-3-3 protein GF14iota GI:12963453 from [Arabidopsis
           thaliana]
          Length = 268

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 23/64 (35%), Positives = 33/64 (51%)
 Frame = +1

Query: 136 LPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRMSVC 315
           + SS    ++E  V  AKL+EQAERYD+M   MK+V    S L         +  +  + 
Sbjct: 1   MSSSGSDKERETFVYMAKLSEQAERYDEMVETMKKVARVNSELTVEERNLLSVGYKNVIG 60

Query: 316 ARRS 327
           ARR+
Sbjct: 61  ARRA 64


>At1g22300.3 68414.m02790 14-3-3 protein GF14 epsilon (GRF10)
           identical to 14-3-3 protein GF14 epsilon GI:5802798,
           SP:P48347 from [Arabidopsis thaliana]
          Length = 251

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 21/59 (35%), Positives = 32/59 (54%)
 Frame = +1

Query: 151 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRMSVCARRS 327
           M  ++E+ V  AKL+EQ ERYD+M  AMK+V +    L         +  +  + ARR+
Sbjct: 1   MENEREKQVYLAKLSEQTERYDEMVEAMKKVAQLDVELTVEERNLVSVGYKNVIGARRA 59


>At1g22300.2 68414.m02789 14-3-3 protein GF14 epsilon (GRF10)
           identical to 14-3-3 protein GF14 epsilon GI:5802798,
           SP:P48347 from [Arabidopsis thaliana]
          Length = 254

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 21/59 (35%), Positives = 32/59 (54%)
 Frame = +1

Query: 151 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRMSVCARRS 327
           M  ++E+ V  AKL+EQ ERYD+M  AMK+V +    L         +  +  + ARR+
Sbjct: 1   MENEREKQVYLAKLSEQTERYDEMVEAMKKVAQLDVELTVEERNLVSVGYKNVIGARRA 59


>At1g22300.1 68414.m02788 14-3-3 protein GF14 epsilon (GRF10)
           identical to 14-3-3 protein GF14 epsilon GI:5802798,
           SP:P48347 from [Arabidopsis thaliana]
          Length = 254

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 21/59 (35%), Positives = 32/59 (54%)
 Frame = +1

Query: 151 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRMSVCARRS 327
           M  ++E+ V  AKL+EQ ERYD+M  AMK+V +    L         +  +  + ARR+
Sbjct: 1   MENEREKQVYLAKLSEQTERYDEMVEAMKKVAQLDVELTVEERNLVSVGYKNVIGARRA 59


>At3g02520.1 68416.m00240 14-3-3 protein GF14 nu (GRF7) identical to
           14-3-3 protein GF14 nu GI:1531631 from [Arabidopsis
           thaliana]
          Length = 265

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = +1

Query: 151 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET 252
           MS  +EE V  AKLAEQAERY++M   M++V +T
Sbjct: 1   MSSSREENVYLAKLAEQAERYEEMVEFMEKVAKT 34



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 261 LSNEERNLLSVAYKNV 308
           L+ EERNLLSVAYKNV
Sbjct: 40  LTVEERNLLSVAYKNV 55


>At1g78300.1 68414.m09125 14-3-3 protein GF14 omega (GRF2) identical
           to GF14omega isoform GI:487791 from [Arabidopsis
           thaliana]
          Length = 259

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +1

Query: 151 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET--GSNLATRRGTXFQLLIRMSVCARR 324
           M+  +EE V  AKLAEQAERY++M   M++V+    G  L         +  +  + ARR
Sbjct: 1   MASGREEFVYMAKLAEQAERYEEMVEFMEKVSAAVDGDELTVEERNLLSVAYKNVIGARR 60

Query: 325 S 327
           +
Sbjct: 61  A 61


>At1g35160.1 68414.m04360 14-3-3 protein GF14 phi (GRF4) identical
           to GF14 protein phi chain GI:1493805, SP:P46077 from
           [Arabidopsis thaliana]
          Length = 267

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +1

Query: 163 KEELVQRAKLAEQAERYDDMAAAMKEVTE 249
           +EE V  AKLAEQAERY++M   M++V E
Sbjct: 11  REEFVYLAKLAEQAERYEEMVEFMEKVAE 39



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 261 LSNEERNLLSVAYKNV 308
           L+ EERNLLSVAYKNV
Sbjct: 46  LTVEERNLLSVAYKNV 61


>At5g38480.1 68418.m04651 14-3-3 protein GF14 psi (GRF3) (RCI1)
           identical to 14-3-3 protein GF14 psi GI:1168200,
           SP:P42644
          Length = 255

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +1

Query: 163 KEELVQRAKLAEQAERYDDMAAAMKEVTET 252
           +EE V  AKLAEQAERY++M   M++V +T
Sbjct: 4   REENVYMAKLAEQAERYEEMVEFMEKVAKT 33



 Score = 31.5 bits (68), Expect = 0.14
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +3

Query: 261 LSNEERNLLSVAYKNV 308
           LS EERNLLSVAYKNV
Sbjct: 39  LSVEERNLLSVAYKNV 54


>At1g34760.1 68414.m04323 14-3-3 protein GF14 omicron (GRF11)
           identical to SP:Q9S9Z8, 14-3-3-like protein GF14 omicron
           (General regulatory factor 11){Arabidopsis thaliana}
          Length = 255

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +1

Query: 151 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRMSVCARRS 327
           M  ++ + V  AKL EQAERYD+M  AMK+V      L         +  +  + ARR+
Sbjct: 1   MENERAKQVYLAKLNEQAERYDEMVEAMKKVAALDVELTIEERNLLSVGYKNVIGARRA 59


>At5g16050.1 68418.m01876 14-3-3 protein GF14 upsilon (GRF5)
           identical to 14-3-3 protein GF14 upsilon GI:2232148 from
           [Arabidopsis thaliana]
          Length = 268

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +1

Query: 163 KEELVQRAKLAEQAERYDDMAAAMKEVTET 252
           +EE V  AKLAEQAERY++M   M++V +T
Sbjct: 7   REENVYLAKLAEQAERYEEMVEFMEKVAKT 36



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 261 LSNEERNLLSVAYKNV 308
           L+ EERNLLSVAYKNV
Sbjct: 42  LTVEERNLLSVAYKNV 57


>At2g42590.1 68415.m05270 14-3-3 protein GF14 mu (GRF9) identical to
           GF14 mu GI:3551052, SP:Q96299 from [Arabidopsis
           thaliana]
          Length = 263

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +1

Query: 160 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRMSVCARRS 327
           +++  V  AKL+EQAERY++M  +MK V +   +L         +  +  + +RR+
Sbjct: 6   ERDTFVYLAKLSEQAERYEEMVESMKSVAKLNVDLTVEERNLLSVGYKNVIGSRRA 61


>At4g09000.1 68417.m01487 14-3-3-like protein GF14 chi /  general
           regulatory factor 1 (GRF1) identical to 14-3-3 protein
           GF14 chi chain GI:1702986, SP:P42643 from [Arabidopsis
           thaliana]
          Length = 267

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +1

Query: 163 KEELVQRAKLAEQAERYDDMAAAMKEVTE 249
           ++E V  AKLAEQAERY++M   M++V +
Sbjct: 10  RDEFVYMAKLAEQAERYEEMVEFMEKVAK 38



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 261 LSNEERNLLSVAYKNV 308
           L+ EERNLLSVAYKNV
Sbjct: 45  LTVEERNLLSVAYKNV 60


>At5g10450.1 68418.m01211 14-3-3 protein GF14 lambda (GRF6) (AFT1)
           identical to 14-3-3 GF14lambda GI:1345595 from
           [Arabidopsis thaliana]
          Length = 248

 Score = 33.5 bits (73), Expect = 0.035
 Identities = 16/38 (42%), Positives = 27/38 (71%)
 Frame = +1

Query: 154 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLA 267
           ++ +++ V  AKLAEQAERY++M   M+++  TG+  A
Sbjct: 4   TLGRDQYVYMAKLAEQAERYEEMVQFMEQLV-TGATPA 40



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 261 LSNEERNLLSVAYKNV 308
           L+ EERNLLSVAYKNV
Sbjct: 43  LTVEERNLLSVAYKNV 58


>At1g78220.1 68414.m09115 14-3-3 protein GF14 pi (GRF13) similar to
           GF14 epsilon isoform GI:1022778 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00244 14-3-3
           proteins
          Length = 245

 Score = 33.5 bits (73), Expect = 0.035
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +1

Query: 151 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLA 267
           M  ++E+L+  AKL  QA RYDD+  +M++V E    L+
Sbjct: 1   MENEREKLIYLAKLGCQAGRYDDVMKSMRKVCELDIELS 39



 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 255 VXLSNEERNLLSVAYKNV 308
           + LS EER+LL+  YKNV
Sbjct: 36  IELSEEERDLLTTGYKNV 53


>At5g65430.2 68418.m08229 14-3-3 protein GF14 kappa (GRF8) identical
           to 14-3-3 protein GF14 kappa GI:5802794, SP:P48348 from
           [Arabidopsis thaliana]
          Length = 246

 Score = 33.1 bits (72), Expect = 0.046
 Identities = 13/30 (43%), Positives = 23/30 (76%)
 Frame = +1

Query: 154 SVDKEELVQRAKLAEQAERYDDMAAAMKEV 243
           ++ +++ V  AKLAEQAERY++M   M+++
Sbjct: 4   TLSRDQYVYMAKLAEQAERYEEMVQFMEQL 33



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 261 LSNEERNLLSVAYKNV 308
           L+ EERNLLSVAYKNV
Sbjct: 43  LTVEERNLLSVAYKNV 58


>At5g65430.1 68418.m08228 14-3-3 protein GF14 kappa (GRF8) identical
           to 14-3-3 protein GF14 kappa GI:5802794, SP:P48348 from
           [Arabidopsis thaliana]
          Length = 248

 Score = 33.1 bits (72), Expect = 0.046
 Identities = 13/30 (43%), Positives = 23/30 (76%)
 Frame = +1

Query: 154 SVDKEELVQRAKLAEQAERYDDMAAAMKEV 243
           ++ +++ V  AKLAEQAERY++M   M+++
Sbjct: 4   TLSRDQYVYMAKLAEQAERYEEMVQFMEQL 33



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 261 LSNEERNLLSVAYKNV 308
           L+ EERNLLSVAYKNV
Sbjct: 43  LTVEERNLLSVAYKNV 58


>At1g60640.1 68414.m06826 expressed protein
          Length = 340

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 142 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQ 291
           SS      E+LV+  K+    E  DD+  A +E  + G+  + R+G   Q
Sbjct: 136 SSKKHARMEKLVKEGKIRTDDEEVDDLETASQEKEKKGNRRSQRQGKRSQ 185


>At5g04980.1 68418.m00527 endonuclease/exonuclease/phosphatase
           family protein contains similarity to inositol
           polyphosphate 5-phosphatase I (GI:10444261) and II
           (GI:10444263) [Arabidopsis thaliana]; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 437

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 215 SYRSACSANLARCTSSSLSTDIVDD-GRELIH*CP 114
           S+R+ C   L  C  S+ S DIV   GRE    CP
Sbjct: 113 SFRTECRRKLKICNCSTFSEDIVRKYGRESCFRCP 147


>At1g22290.1 68414.m02787 14-3-3 protein GF14, putative (GRF10)
           similar to 14-3-3 protein GF14 epsilon GI:5802798 from
           [Arabidopsis thaliana]
          Length = 196

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 252 RVXLSNEERNLLSVAYKNV 308
           +  LS +ERNL+SV YKNV
Sbjct: 39  KAELSAKERNLVSVGYKNV 57


>At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein similar to UDP-glucose:salicylic acid
           glucosyltransferase [Nicotiana tabacum] GI:7385017;
           contains Pfam profiles PF00201: UDP-glucoronosyl and
           UDP-glucosyl transferase, PF01535: PPR repeat
          Length = 1184

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +2

Query: 50  AREXLILCLNLLVQIHFSPSDKGISELVLFHRPRCPS 160
           A++ ++L + + V+I+ + S K    +V+F+R  CPS
Sbjct: 420 AQKRIVLFVKMTVRIYDAVSTKIPKSIVVFNRTPCPS 456


>At1g18180.1 68414.m02260 expressed protein
          Length = 292

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
 Frame = +2

Query: 149 RCPSTRKNWCNVPNW-----PNKLSDMTTW 223
           +CP  +  WC+V  W     PN   +M  W
Sbjct: 164 KCPENKGKWCDVGVWKYSRHPNYFGEMLLW 193


>At2g15290.1 68415.m01744 expressed protein
          Length = 296

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 133 SLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETG 255
           S P+S  SV  +  V +AKLA+ A+R +  +   K +   G
Sbjct: 84  SYPTSPSSVPGDNEVDKAKLAQVAKRLEKTSRYFKRLGSIG 124


>At4g16960.1 68417.m02558 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1041

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 71  CLNLLVQIHFSPSDKGISELVL 136
           CLN LV+IH    DK + ++V+
Sbjct: 83  CLNELVEIHKCHKDKDLDQMVI 104


>At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1103

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 71  CLNLLVQIHFSPSDKGISELVL 136
           CLN LV+IH    DK + ++V+
Sbjct: 76  CLNELVEIHKCHKDKDLDQMVI 97


>At3g26140.1 68416.m03261 glycosyl hydrolase family 5 protein /
           cellulase family protein contains Pfam profile: PF00150
           cellulase (glycosyl hydrolase family 5)
          Length = 508

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -1

Query: 251 VSVTSFIAAAMSSYRSACSANL---ARCTSSSLSTDIVDDGRELIH*CPCRKGKN 96
           +S TS  +  +S + +  ++N+   A+ T++SL  D+ +    +   C C KG++
Sbjct: 437 LSETSCSSPNLSEWETISASNMLLAAKSTNNSLCLDVDETNNLMASNCKCVKGED 491


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,838,459
Number of Sequences: 28952
Number of extensions: 125133
Number of successful extensions: 364
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -