Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0025.Seq
         (439 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR...    27   4.2  
At2g32765.1 68415.m04009 small ubiquitin-like modifier 5 (SUMO) ...    26   9.7  
At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    26   9.7  
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa...    26   9.7  

>At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1039

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 189 RNPHLHGHQYKTTDTYLLTHNMPYESVKF 275
           RNP  HG +   T    L H +PY  V F
Sbjct: 359 RNPPFHGSERLFTRASQLAHGLPYALVAF 387


>At2g32765.1 68415.m04009 small ubiquitin-like modifier 5 (SUMO)
           similar to ubiquitin-like protein SMT3 SP:P55852
           [Arabidopsis thaliana]; contains INTERPRO:IPR000626
           ubiquitin domain; contains Pfam profile PF00240:
           Ubiquitin family; contains Pfam profile PF00240:
           Ubiquitin family;  identical to cDNA small
           ubiquitin-like modifier 5 (SUMO) mRNA GI:22652847
          Length = 108

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 204 HGHQYKTTDTYLLTHNMPYESVKFEPNTRTV 296
           H H  K    Y    N+ Y SV+F  N R +
Sbjct: 47  HAHLKKLMSAYCTKRNLDYSSVRFVYNGREI 77


>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +3

Query: 105 TVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKTTD 230
           ++ + + + A G+ P+TK  I++++ S    HL+    K  D
Sbjct: 38  SINVLLSLIAAGSNPVTKEEILSFLMSPSTDHLNAVLAKIAD 79


>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
           profiles PF00085: Thioredoxin, PF00515: TPR Domain;
           similar to tetratricopeptide repeat protein 2
           (GI:7248701) [Drosophila melanogaster]; similar to DnaJ
           homolog subfamily C member 7 (Tetratricopeptide repeat
           protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
           [Homo sapiens]
          Length = 699

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 188 LRIDVCNYLMFCYRSGTVCW 129
           LR+D CN +++C R+   CW
Sbjct: 492 LRLDPCNAILYCNRA--ACW 509


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,840,555
Number of Sequences: 28952
Number of extensions: 175586
Number of successful extensions: 355
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)