Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0024.Seq
         (368 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak...    31   0.24 
At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak ...    26   6.8  
At3g60600.1 68416.m06781 vesicle-associated membrane protein, pu...    26   6.8  
At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak ...    26   9.0  
At3g10260.3 68416.m01230 reticulon family protein weak similarit...    26   9.0  
At3g10260.2 68416.m01229 reticulon family protein weak similarit...    26   9.0  
At3g10260.1 68416.m01228 reticulon family protein weak similarit...    26   9.0  
At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low ...    26   9.0  

>At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak
           similarity to neuroendocrine-specific protein C [Homo
           sapiens] GI:307311; identical to cDNA RTNLB11
           GI:32331878
          Length = 200

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 338 LKXGVLLWCLTYVGACFNGITLIILG 261
           L+  ++LW ++YVG   N +TL+ +G
Sbjct: 128 LQVSLVLWAISYVGTLINSLTLVYIG 153


>At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak
           similarity to Nogo-C protein [Rattus norvegicus]
           GI:6822251; contains Pfam profile PF02453: Reticulon
          Length = 275

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 320 LWCLTYVGACFNGITLIILGWI 255
           LW L+ +G CFN +TL  +  +
Sbjct: 201 LWVLSILGGCFNFLTLAYIALV 222



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = -3

Query: 252 LFTLPKAYEMNKAQVDANLELARAKINE----ITAKVRAAVPLGRRAEGDKD 109
           LFT+P AY+  + +VD   E A  ++ +    +  KV + +PLG      KD
Sbjct: 224 LFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIPLGPLKNKKKD 275


>At3g60600.1 68416.m06781 vesicle-associated membrane protein,
           putative / VAMP, putative similar to VAP27 GI:6688926
           [Nicotiana plumbaginifolia]
          Length = 256

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 222 NKAQVDANLELARAKINEITAKVRAAVPLGRRAEGDKDK 106
           NKA    N   ARA I ++T + ++A+ L  R + + D+
Sbjct: 183 NKAGHQENTSEARALITKLTEEKQSAIQLNNRLQRELDQ 221


>At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak
           similarity to Nogo-C protein [Rattus norvegicus]
           GI:6822251, SP|O95197 Reticulon protein 3
           (Neuroendocrine-specific protein-like) {Homo sapiens};
           contains Pfam profile PF02453: Reticulon
          Length = 257

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 320 LWCLTYVGACFNGITL 273
           LW L+ +G+C+N +TL
Sbjct: 180 LWVLSIIGSCYNFLTL 195


>At3g10260.3 68416.m01230 reticulon family protein weak similarity
           to Nogo-C protein [Rattus norvegicus] GI:6822251;
           contains Pfam profile PF02453: Reticulon; identical to
           cDNA GI:32331854
          Length = 267

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 320 LWCLTYVGACFNGITLIILGWI 255
           LW    VG+C N +T++ +G++
Sbjct: 193 LWVAAMVGSCCNFLTVLYIGFV 214


>At3g10260.2 68416.m01229 reticulon family protein weak similarity
           to Nogo-C protein [Rattus norvegicus] GI:6822251;
           contains Pfam profile PF02453: Reticulon; identical to
           cDNA GI:32331854
          Length = 247

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 320 LWCLTYVGACFNGITLIILGWI 255
           LW    VG+C N +T++ +G++
Sbjct: 173 LWVAAMVGSCCNFLTVLYIGFV 194


>At3g10260.1 68416.m01228 reticulon family protein weak similarity
           to Nogo-C protein [Rattus norvegicus] GI:6822251;
           contains Pfam profile PF02453: Reticulon; identical to
           cDNA GI:32331854
          Length = 247

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 320 LWCLTYVGACFNGITLIILGWI 255
           LW    VG+C N +T++ +G++
Sbjct: 173 LWVAAMVGSCCNFLTVLYIGFV 194


>At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low
           similarity to neuroendocrine-specific protein C [Homo
           sapiens] GI:307311, SP|Q64548 Reticulon 1
           (Neuroendocrine-specific protein) {Rattus norvegicus};
           contains Pfam profile PF02453: Reticulon
          Length = 201

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 335 KXGVLLWCLTYVGACFNGITLIILG 261
           +  V+LW +++VG   N +T++ LG
Sbjct: 121 RVSVVLWTVSFVGNFLNFLTILYLG 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,592,288
Number of Sequences: 28952
Number of extensions: 50000
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)