Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0018.Seq
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidored... 52 2e-07
At1g14190.1 68414.m01679 glucose-methanol-choline (GMC) oxidored... 47 5e-06
At3g56060.1 68416.m06229 glucose-methanol-choline (GMC) oxidored... 46 9e-06
At5g51950.1 68418.m06447 glucose-methanol-choline (GMC) oxidored... 46 1e-05
At1g72970.1 68414.m08439 glucose-methanol-choline (GMC) oxidored... 45 2e-05
At1g14185.1 68414.m01678 glucose-methanol-choline (GMC) oxidored... 45 2e-05
At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored... 44 3e-05
At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative / (R... 42 1e-04
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 34 0.040
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 31 0.21
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 31 0.21
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 28 2.6
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 27 4.6
At4g21610.1 68417.m03132 zinc finger protein, putative similar t... 27 6.1
At3g04440.1 68416.m00470 expressed protein contains Pfam domain,... 27 6.1
At3g03700.1 68416.m00373 expressed protein contains Pfam domain,... 27 6.1
At3g07750.2 68416.m00940 3' exoribonuclease family domain 1-cont... 26 8.0
At3g07750.1 68416.m00939 3' exoribonuclease family domain 1-cont... 26 8.0
At3g01570.1 68416.m00087 glycine-rich protein / oleosin similar ... 26 8.0
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 26 8.0
>At1g12570.1 68414.m01459 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 572
Score = 51.6 bits (118), Expect = 2e-07
Identities = 27/67 (40%), Positives = 37/67 (55%)
Frame = -3
Query: 265 HQVQTVHLFHYSGTCAMGSVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMMAEKI 86
H V T+ +HY G C +G VVD KV GID LRV+D+ST+ + N A +M+ +
Sbjct: 503 HTVTTI--WHYHGGCVVGRVVDGDYKVIGIDRLRVIDMSTVGYCPGTNPQATVMMLGRYM 560
Query: 85 SDDIKNE 65
I E
Sbjct: 561 GVKILRE 567
>At1g14190.1 68414.m01679 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 501
Score = 46.8 bits (106), Expect = 5e-06
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = -3
Query: 241 FHYSGTCAMGSVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMM 98
+HY G C +GSVVD + KV G+ LRVVD ST N +A +M+
Sbjct: 424 YHYHGGCVVGSVVDEEYKVNGVKRLRVVDGSTFEESPGTNPMATVLML 471
>At3g56060.1 68416.m06229 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 577
Score = 46.0 bits (104), Expect = 9e-06
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = -3
Query: 244 LFHYSGTCAMGSVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMMAEKISDDIKNE 65
++HY G C +G VVD+ KV G+D LR++D ST N A +M+ + I E
Sbjct: 507 IYHYHGGCQVGKVVDNNYKVLGVDALRIIDGSTFLKSPGTNPQATIMMLGRYMGQKILRE 566
>At5g51950.1 68418.m06447 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 586
Score = 45.6 bits (103), Expect = 1e-05
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = -3
Query: 244 LFHYSGTCAMGSVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMMAEKISDDIKNE 65
++HY G C +G VVD +V GID+LRV+D ST N A +M+ + I E
Sbjct: 516 IWHYHGGCQVGRVVDKNYRVLGIDSLRVIDGSTFLKSPGTNPQATVMMLGRYMGQRILQE 575
Query: 64 YSL*EK 47
+ K
Sbjct: 576 REIYNK 581
>At1g72970.1 68414.m08439 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 594
Score = 45.2 bits (102), Expect = 2e-05
Identities = 24/62 (38%), Positives = 31/62 (50%)
Frame = -3
Query: 250 VHLFHYSGTCAMGSVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMMAEKISDDIK 71
V ++HY G C +G VV KV G+D LRV+D ST N A +MM + I
Sbjct: 525 VTIWHYHGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYMGVKIL 584
Query: 70 NE 65
E
Sbjct: 585 RE 586
>At1g14185.1 68414.m01678 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 503
Score = 44.8 bits (101), Expect = 2e-05
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = -3
Query: 241 FHYSGTCAMGSVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMM 98
+HY G C +GSVV+ + KV G+ LRVVD ST N +A +M+
Sbjct: 444 YHYHGGCVVGSVVNEEYKVNGVKRLRVVDGSTFEESPGTNPMATVLML 491
>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 582
Score = 44.4 bits (100), Expect = 3e-05
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = -3
Query: 244 LFHYSGTCAMGSVVDSKMKVYGIDNLRVVDVST 146
++HY G C +G VVD KV GID LRV+D ST
Sbjct: 532 VWHYHGGCQVGKVVDKNYKVLGIDGLRVIDGST 564
>At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative /
(R)-oxynitrilase, putative similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|52707];
contains Pfam protile PF00732 GMC oxidoreductase
Length = 552
Score = 42.3 bits (95), Expect = 1e-04
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = -3
Query: 244 LFHYSGTCAMGSVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMM 98
++HY G +G VVDS +KV G+++LR+VD ST N A +M+
Sbjct: 490 IWHYHGGAVVGKVVDSDLKVIGVNSLRLVDGSTFNISPGTNPQATLMML 538
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 33.9 bits (74), Expect = 0.040
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = +3
Query: 9 FYRILFILKAPRHFSQREYSFLMSSLIFSAIIMPAAKVLALTIKGMVLTSTTRRLSIPYT 188
+Y I F A R F Q FL+ + S +++A + M++ +T L++
Sbjct: 643 YYSIGFAPDASRFFKQFLLVFLIQQMAASLF-----RLIASVCRTMMIANTGGALTLLLV 697
Query: 189 FILLSTTLPMAHVPE*WNRWTVW 257
F+L LP +P+ W W W
Sbjct: 698 FLLGGFLLPKGKIPDWWG-WAYW 719
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 31.5 bits (68), Expect = 0.21
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 117 KVLALTIKGMVLTSTTRRLSIPYTFILLSTTLPMAHVPE*WNRWTVW 257
+ +A T + M+L +T L I F+L +P +P+ W +W W
Sbjct: 650 RFIAATCRSMILANTGGALVILLLFLLGGFIVPRGEIPK-WWKWAYW 695
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 31.5 bits (68), Expect = 0.21
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 354 FQDIKAEIADPGLEECGEMDVSSEDYWKCYIKSRPSTYSITPV 226
FQ+ K ++ +PGL + +DVS++ K Y++S P T V
Sbjct: 161 FQEFKNKLLEPGLVD--HIDVSNKSVAKVYVRSTPKDQQTTDV 201
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = -1
Query: 354 FQDIKAEIADPGLEECGEMDVSSEDYWKCYIKSRPSTYSITPV 226
FQ+ K ++ + GL + +DVS+++ K Y++S P + + V
Sbjct: 165 FQEFKNKLLEAGLVD--HIDVSNKEVAKVYVRSSPKSQTTEEV 205
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 27.1 bits (57), Expect = 4.6
Identities = 6/20 (30%), Positives = 14/20 (70%)
Frame = -2
Query: 155 CEHHAFYRQSQYLGGWHNDG 96
C ++Y +++++ WH+DG
Sbjct: 17 CSQDSYYNETRFVESWHDDG 36
>At4g21610.1 68417.m03132 zinc finger protein, putative similar to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 155
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 323 PAWKNAVRWTSVVRIIGSVTSSPDRPPIPLLRYMCHGQC 207
P W++AV +V I +V +P IP M G C
Sbjct: 28 PGWESAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGSC 66
>At3g04440.1 68416.m00470 expressed protein contains Pfam domain,
PF04515: Protein of unknown function, DUF580
Length = 482
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 72 LMSSLIFSAIIMPAAKVLALTIKGMVLTST 161
L L+FS + + + V+ LTI+G++ ST
Sbjct: 56 LFKGLLFSQLTLISLLVIVLTIRGLISAST 85
>At3g03700.1 68416.m00373 expressed protein contains Pfam domain,
PF04515: Protein of unknown function, DUF580
Length = 482
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 72 LMSSLIFSAIIMPAAKVLALTIKGMVLTST 161
L L+FS + + + V+ LTI+G++ ST
Sbjct: 56 LFKGLLFSQLTLISLLVIVLTIRGLISAST 85
>At3g07750.2 68416.m00940 3' exoribonuclease family domain
1-containing protein similar to SP|Q15024 Exosome
complex exonuclease RRP42 (EC 3.1.13.-) (Ribosomal RNA
processing protein 42) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 286
Score = 26.2 bits (55), Expect = 8.0
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -1
Query: 348 DIKAEIADPGLEECGEMDVSSEDYWKCYIKSRPSTYSITPVHVPWAV 208
++ AE+AD +E E+D+S E+Y + S P ++T V + V
Sbjct: 171 NVSAEVAD---DEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIV 214
>At3g07750.1 68416.m00939 3' exoribonuclease family domain
1-containing protein similar to SP|Q15024 Exosome
complex exonuclease RRP42 (EC 3.1.13.-) (Ribosomal RNA
processing protein 42) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 286
Score = 26.2 bits (55), Expect = 8.0
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -1
Query: 348 DIKAEIADPGLEECGEMDVSSEDYWKCYIKSRPSTYSITPVHVPWAV 208
++ AE+AD +E E+D+S E+Y + S P ++T V + V
Sbjct: 171 NVSAEVAD---DEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIV 214
>At3g01570.1 68416.m00087 glycine-rich protein / oleosin similar to
oleosin GB:AAB58402 [Sesamum indicum]
Length = 183
Score = 26.2 bits (55), Expect = 8.0
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 84 LIFSAIIMPAAKVLALTIKGMVLTSTTRRLSI-PYTFILLSTTLPMAHVPE 233
LIFS +I+PAA V+ L + G + + + +++L H+PE
Sbjct: 73 LIFSPVIVPAAFVIGLAMTGFLASGAIGLTGLSSMSWVLNYIRRAGQHIPE 123
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 166 RVVDVSTMPFIVRANTLAAGIMMAEKISDDI 74
R+V++ P ++ NTL G+ + K+SD +
Sbjct: 684 RMVEMGHKPTLITLNTLVNGLCLNGKVSDAV 714
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,204,829
Number of Sequences: 28952
Number of extensions: 204824
Number of successful extensions: 401
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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