Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0015.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24706.1 68414.m03104 expressed protein                             32   0.21 
At5g48540.1 68418.m06001 33 kDa secretory protein-related contai...    27   4.4  
At5g19980.1 68418.m02378 integral membrane family protein contai...    27   4.4  
At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR...    27   4.4  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    27   7.7  

>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 190  PNPRTILDQSC*GPSPMERAGGGLCHEARRTPRYTIRNNKQKXKNVNFMV 41
            P P  I+  S      +ER  GG  H  R +PR+  R  ++  +N++  V
Sbjct: 1582 PLPPNIIPHSMAAKEDLERRAGGARHSQRLSPRHEEREKRRSEENLSVSV 1631


>At5g48540.1 68418.m06001 33 kDa secretory protein-related contains
           Pfam PF01657: Domain of unknown function, duplicated in
           33 KDa secretory proteins
          Length = 263

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 325 IFYTSYYIRYFCLPSYFPISNSVT 396
           + Y+S Y+RY   P YFP+  + T
Sbjct: 226 VLYSSCYVRYEFYPFYFPLDPAKT 249


>At5g19980.1 68418.m02378 integral membrane family protein contains
           Pfam profile: PF00892 Integral membrane protein; similar
           to LPG2 protein (GI:9998817)  [Leishmania mexicana]
          Length = 341

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 177 VLGLGVYHRSISFLVAPVFW 236
           + GL +Y+  +S ++APVFW
Sbjct: 187 IWGLVLYNNLLSLMIAPVFW 206


>At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1007

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 316  HLXIFYTSY-YIRYFCLPSYFPISNSVTKSDTQHASF 423
            HL IF++   +I + CLP  F ISN + +  +++  F
Sbjct: 946  HLFIFHSCLPFIFHSCLPFIFDISNIMLEFSSEYKDF 982


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 382 KLGNKKEDKSTGYNNSYRKSLNGVGQDIC 296
           ++GN +EDKS G ++S       VG+++C
Sbjct: 207 EMGNVEEDKSDGDDSSDEDWGKNVGKEVC 235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,908,296
Number of Sequences: 28952
Number of extensions: 208841
Number of successful extensions: 468
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)