Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0044
         (495 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31250.1 68415.m03816 glutamyl-tRNA reductase, putative simil...    29   1.7  
At4g20060.1 68417.m02935 expressed protein  ; expression support...    28   4.0  
At5g20120.1 68418.m02395 expressed protein                             27   9.2  
At1g47530.1 68414.m05275 ripening-responsive protein, putative s...    27   9.2  

>At2g31250.1 68415.m03816 glutamyl-tRNA reductase, putative similar
           to HEMA2 [SP|P49294], HEMA1 [SP|P42804]
          Length = 524

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +2

Query: 56  LKGKRDRNRSPLRQKLVFYHQRLLNTKTENTVLKKTRIDLVQRLHAYIAKTYQKD 220
           L+ K +R R+   +KL+  H   ++ KT   V K+TRI +V  +  Y  K  + D
Sbjct: 432 LRSKTERIRAECVEKLISKHGNGMDKKTREAVEKQTRI-IVNNILDYPMKHLRYD 485


>At4g20060.1 68417.m02935 expressed protein  ; expression supported
           by MPSS
          Length = 1134

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 173 NRYASSSVLCFQFWYLVV 120
           N  ASS V CFQ W+LV+
Sbjct: 710 NIIASSGVFCFQTWFLVL 727


>At5g20120.1 68418.m02395 expressed protein 
          Length = 188

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 93  LSGLLFRSLLPFKFSPLWCICAVGMLFTFFL 1
           L G++   LL F   P+W    + +LFT F+
Sbjct: 134 LLGIISFGLLSFALWPIWGFLTLPLLFTLFM 164


>At1g47530.1 68414.m05275 ripening-responsive protein, putative
           similar to ripening regulated protein DDTFR18
           [Lycopersicon esculentum] GI:12231296; contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 484

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 164 ASSSVLCFQFWYLVV 120
           AS+ +LC +FWYL+V
Sbjct: 265 ASALMLCLEFWYLMV 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,049,585
Number of Sequences: 28952
Number of extensions: 225896
Number of successful extensions: 569
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)