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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0037
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           140   9e-34
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   136   2e-32
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45...    48   9e-06
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45...    44   1e-04
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45...    44   1e-04
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45...    44   1e-04
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45...    43   2e-04
At5g07010.1 68418.m00794 sulfotransferase family protein similar...    30   1.5  
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    29   4.5  
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera...    29   4.5  
At5g58340.1 68418.m07305 expressed protein ; expression supporte...    28   5.9  

>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  140 bits (339), Expect = 9e-34
 Identities = 63/86 (73%), Positives = 76/86 (88%)
 Frame = +2

Query: 503 EEKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 682
           + KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V+
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVK 199

Query: 683 SGDRASFSKVVEAIKTNFNERYEELR 760
           + D+  FSK++EAIK NFN++YEE R
Sbjct: 200 NEDKLEFSKILEAIKANFNDKYEEYR 225



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 34/86 (39%), Positives = 46/86 (53%)
 Frame = +3

Query: 255 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 434
           QK +L++RLKVPP +NQFT+TLDK  A  LFK+L KYRPE                    
Sbjct: 58  QKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE-DKAAKKERLVKKAQAEAEG 116

Query: 435 XXXXXXRPNTIRSGTNTVTKLVEKKR 512
                 +P  ++ G N VT L+E+ +
Sbjct: 117 KPSESKKPIVVKYGLNHVTYLIEQNK 142



 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 23/39 (58%), Positives = 32/39 (82%)
 Frame = +1

Query: 145 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRRR 261
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QR++
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQK 59


>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  136 bits (329), Expect = 2e-32
 Identities = 62/86 (72%), Positives = 74/86 (86%)
 Frame = +2

Query: 503 EEKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 682
           + KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT   L LT V+
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVK 198

Query: 683 SGDRASFSKVVEAIKTNFNERYEELR 760
           + D+  FSK++EAIK NFN++YEE R
Sbjct: 199 NEDKLEFSKILEAIKANFNDKYEEYR 224



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 35/86 (40%), Positives = 46/86 (53%)
 Frame = +3

Query: 255 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 434
           QK +L++RLKVPP +NQFT+TLDK  A  LFKIL KYRPE                    
Sbjct: 57  QKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEG 115

Query: 435 XXXXXXRPNTIRSGTNTVTKLVEKKR 512
                 +P  ++ G N VT L+E+ +
Sbjct: 116 KPAESKKPIVVKYGLNHVTYLIEQNK 141



 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 23/39 (58%), Positives = 32/39 (82%)
 Frame = +1

Query: 145 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRRR 261
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QR++
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQK 58


>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 156

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 24/87 (27%), Positives = 44/87 (50%)
 Frame = +2

Query: 500 REEKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNV 679
           R  +  L VIA ++ PI+++  LP LC + GVPY  V  K  L      K  TC  L  +
Sbjct: 63  RRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVML 122

Query: 680 ESGDRASFSKVVEAIKTNFNERYEELR 760
           +       ++ +  +KT++ +  ++++
Sbjct: 123 KPAKGDLTAEELAKLKTDYEQVSDDIK 149


>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 160

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +2

Query: 512 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 685
           ++ VV+A D +P+E++L LP L     VPY  V  K  LG    V R    C   +N  S
Sbjct: 83  SEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 142

Query: 686 GDRASFSKVVEAIK 727
             ++    + +AI+
Sbjct: 143 QLKSQIQHLKDAIE 156


>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +2

Query: 512 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 685
           ++ VV+A D +P+E++L LP L     VPY  V  K  LG    V R    C   +N  S
Sbjct: 51  SEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 110

Query: 686 GDRASFSKVVEAIK 727
             ++    + +AI+
Sbjct: 111 QLKSQIQHLKDAIE 124


>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +2

Query: 512 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 685
           ++ VV+A D +P+E++L LP L     VPY  V  K  LG    V R    C   +N  S
Sbjct: 51  SEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 110

Query: 686 GDRASFSKVVEAIK 727
             ++    + +AI+
Sbjct: 111 QLKSQIQHLKDAIE 124


>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +2

Query: 512 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 685
           ++ +V+A D +P+E++L LP L     VPY  V  K  LG    V R    C   +N  S
Sbjct: 51  SEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEAS 110

Query: 686 GDRASFSKVVEAIK 727
             ++    + +AI+
Sbjct: 111 QLKSQIQHLKDAIE 124


>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
           steroid sulfotransferase 3 [Brassica napus] GI:3420008,
           steroid sulfotransferase 1 [Brassica napus] GI:3420004;
           contains Pfam profile PF00685: Sulfotransferase domain
          Length = 359

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 515 APFLLDQLGDCVCAGSDGVGPLWWRLI 435
           +P LLDQ  D  C G  G GP W  ++
Sbjct: 212 SPVLLDQAFDLYCRGVIGFGPFWEHML 238


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 470  SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 312
            + G+ P+  R +F   +  +S  QP  P CF L P  L  LE + +CS++  +
Sbjct: 971  NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein glucuronosyl transferase homolog,
           Lycopersicon esculentum, PIR:S39507 ;contains Pfam
           profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
           transferase
          Length = 460

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 607 CQGQVPPRCTCTPQDMHMLSSNKCGVW*PRLLLEGRGSHQDELQRALRGAPQHWG 771
           C+G VP  CT    D H+ +     VW   +LLE     + E+++ LR      G
Sbjct: 362 CEG-VPMICTSCFTDQHVNARYIVDVWRVGMLLERSKMEKKEIEKVLRSVMMEKG 415


>At5g58340.1 68418.m07305 expressed protein ; expression supported
           by MPSS
          Length = 466

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 428 QER*ASTKEAQHHPIRHKHSHQAGREEKAQLVVIAHDVDP 547
           +E   S ++ +H P   K    A RE K  LV I   +DP
Sbjct: 272 EEHTVSAQDQEHEPSLDKGDEMAARELKEYLVEIQGHIDP 311


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,433,446
Number of Sequences: 28952
Number of extensions: 314226
Number of successful extensions: 969
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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