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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0027
         (787 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    69   4e-12
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    69   4e-12
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    66   2e-11
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   2.0  
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN...    29   3.5  
At2g27270.1 68415.m03277 expressed protein                             29   4.6  
At5g43310.1 68418.m05293 COP1-interacting protein-related contai...    28   8.1  
At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family...    28   8.1  
At3g05050.1 68416.m00548 protein kinase family protein contains ...    28   8.1  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 37/83 (44%), Positives = 52/83 (62%)
 Frame = +2

Query: 266 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 445
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114

Query: 446 SGLLLVTGPFAFNSCPLRRIPSA 514
           SGLLLVTGPF  N  PLRR+  A
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQA 137



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 37/94 (39%), Positives = 48/94 (51%)
 Frame = +1

Query: 472 FCIQFVPATPYS*RYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 651
           F I  VP    +  YVIGTST++ +    L K F+D YF              EG+   A
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYFGKVAEKKKKKT---EGEFFEA 179

Query: 652 TKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKK 753
            K+EK    + +K DQK VD A+IKAI A P+ K
Sbjct: 180 EKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELK 213


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 37/83 (44%), Positives = 52/83 (62%)
 Frame = +2

Query: 266 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 445
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114

Query: 446 SGLLLVTGPFAFNSCPLRRIPSA 514
           SGLLLVTGPF  N  PLRR+  A
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQA 137



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 37/94 (39%), Positives = 48/94 (51%)
 Frame = +1

Query: 472 FCIQFVPATPYS*RYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 651
           F I  VP    +  YVIGTST++ +    L K F+D YF              EG+   A
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYFGKVAEKKKKKT---EGEFFEA 179

Query: 652 TKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKK 753
            K+EK    + +K DQK VD A+IKAI A P+ K
Sbjct: 180 EKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELK 213


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 36/83 (43%), Positives = 51/83 (61%)
 Frame = +2

Query: 266 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 445
           P+++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLS 114

Query: 446 SGLLLVTGPFAFNSCPLRRIPSA 514
           SGLLLVTGPF  N  PLRR+  A
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQA 137



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 38/95 (40%), Positives = 50/95 (52%)
 Frame = +1

Query: 472 FCIQFVPATPYS*RYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 651
           F I  VP    +  YVIGTST+I +      K F+D YF              EG+   A
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYFGKVAEKKKKKT---EGEFFEA 179

Query: 652 TKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKV 756
            K+EK    +++K DQKTVD A+IK+I A P+ KV
Sbjct: 180 EKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKV 214


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 266 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 355
           P++RR+S  P +E++  S GGR  S  H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555


>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
            topoisomerase II / DNA gyrase (TOP2) identical to
            SP|P30182 DNA topoisomerase II (EC 5.99.1.3) {Arabidopsis
            thaliana}
          Length = 1473

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 649  ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKV 756
            ATK  K  P+  RK  ++TV    + AIG  P+KKV
Sbjct: 1354 ATKAAK-PPAAPRKRGKQTVASTEVLAIGVSPEKKV 1388


>At2g27270.1 68415.m03277 expressed protein
          Length = 231

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +2

Query: 293 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 472
           PT++K  A   G   SKH R +  +    + C+       GK ++  G+  + +LL+   
Sbjct: 21  PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73

Query: 473 FAFNSCPLR-RIPSAM 517
           FAFN   ++ R+P  M
Sbjct: 74  FAFNYIAIQPRVPRFM 89


>At5g43310.1 68418.m05293 COP1-interacting protein-related contains
           similarity to COP1-Interacting Protein 7 (CIP7)
           [Arabidopsis thaliana] GI:3327868
          Length = 1237

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = -1

Query: 442 QNSNKYNPLACMSTSEENANSSYLQVGSDPAYMLAEWTA-TR*GTDFLLSG--VEGLPTF 272
           +NS+  +P    + ++ N N  Y+Q G     M A W   +  GT  +  G  ++G+P +
Sbjct: 334 ENSDAKSP----TDNKRNGNQEYVQ-GQHRQPMYAPWPVHSPPGTFPVFQGYTMQGMPYY 388

Query: 271 EGYCSGPPFFSP 236
            GY    P+ SP
Sbjct: 389 PGYPGASPYPSP 400


>At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family
           protein identical to hydroxyproline-rich glycoprotein
           [Arabidopsis thaliana] gi|9293881|dbj|BAB01784
          Length = 532

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -1

Query: 286 GLPTFEGYCSGP-PFFSPPI 230
           G P + GYC+GP P  +PP+
Sbjct: 495 GYPAYNGYCNGPVPAPAPPV 514


>At3g05050.1 68416.m00548 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 593

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +2

Query: 551 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSMRL*SKP 730
           T   ++TS ++    + SASN +   +     + QKK N F ++ AK  + +  R  SKP
Sbjct: 40  TETTESTSAVV----VASASNGEE-VRNHEDVVDQKKENGFVVTEAKERKSKGERKRSKP 94

Query: 731 LEPDPTR 751
             PDP R
Sbjct: 95  --PDPRR 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,425,438
Number of Sequences: 28952
Number of extensions: 368310
Number of successful extensions: 1030
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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