Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0019
         (828 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42390.1 68415.m05246 protein kinase C substrate, heavy chain...    31   1.2  
At1g32330.1 68414.m03983 heat shock transcription factor family ...    30   2.2  
At4g17750.1 68417.m02650 heat shock factor protein 1 (HSF1) / he...    29   3.8  
At5g65200.1 68418.m08200 armadillo/beta-catenin repeat family pr...    28   6.6  

>At2g42390.1 68415.m05246 protein kinase C substrate, heavy
           chain-related similar to Protein kinase C substrate, 80
           kDa protein, heavy chain (PKCSH) (80K-H protein)
           (Swiss-Prot:P14314) [Homo sapiens]; contains 1
           transmembrane domain;
          Length = 212

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 278 CGTSSYYKMGVGKPQNYMYMKNVFDKICDMC 370
           C    +Y   +G    ++Y   V D+ICD C
Sbjct: 74  CPNGKFYCRNIGSSPKFVYSSRVNDRICDCC 104


>At1g32330.1 68414.m03983 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 485

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 198 KFRQDYTIKNINRDKQYLIYSQFDNRRQEQKFDNSMHACVRQIHDM 61
           KF  +  ++ + RDK  L+      R+Q+Q  DN +   V+++  M
Sbjct: 158 KFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGM 203


>At4g17750.1 68417.m02650 heat shock factor protein 1 (HSF1) / heat
           shock transcription factor 1 (HSTF1) identical to heat
           shock transcription factor 1 (HSF1) SP:P41151 from
           [Arabidopsis thaliana] ;contains Pfam profile: PF00447
           HSF-type DNA-binding domain
          Length = 495

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 198 KFRQDYTIKNINRDKQYLIYSQFDNRRQEQKFDNSMHACVRQIHDM 61
           KF  +  ++ + RDK  L+      R+Q+Q  DN +   V+ +  M
Sbjct: 178 KFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHLQVM 223


>At5g65200.1 68418.m08200 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 556

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = -2

Query: 167 LIETNNI*SILNLTTDAKNKSLTIV 93
           L++TN + S++NL+ D KNK LTIV
Sbjct: 281 LVQTNALASLVNLSLDKKNK-LTIV 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,314,296
Number of Sequences: 28952
Number of extensions: 355890
Number of successful extensions: 710
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)