Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0001
(578 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 165 1e-41
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 165 2e-41
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 164 3e-41
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 164 3e-41
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 164 3e-41
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 164 3e-41
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 8e-06
At1g72390.1 68414.m08373 expressed protein 31 0.73
At5g36170.2 68418.m04359 peptide chain release factor, putative ... 30 1.3
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.0
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 3.9
At4g03740.1 68417.m00513 hypothetical protein 27 6.8
At3g01450.1 68416.m00069 expressed protein 27 6.8
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 165 bits (402), Expect = 1e-41
Identities = 73/85 (85%), Positives = 81/85 (95%)
Frame = +1
Query: 1 DFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 180
D +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGA
Sbjct: 80 DLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGA 139
Query: 181 IILAKLSVLPVRRGYWGNKIGKPHT 255
IILAKLSV+P+RRGYWGNKIGKPHT
Sbjct: 140 IILAKLSVVPIRRGYWGNKIGKPHT 164
Score = 108 bits (260), Expect = 2e-24
Identities = 48/79 (60%), Positives = 59/79 (74%)
Frame = +3
Query: 255 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 434
VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF
Sbjct: 165 VPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 224
Query: 435 XXXXXXXXXXXLTPDLWRD 491
LTP+ W++
Sbjct: 225 TFDCLQKTYGFLTPEFWKE 243
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 165 bits (401), Expect = 2e-41
Identities = 74/85 (87%), Positives = 80/85 (94%)
Frame = +1
Query: 1 DFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 180
D +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGA
Sbjct: 89 DMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGA 148
Query: 181 IILAKLSVLPVRRGYWGNKIGKPHT 255
IILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 149 IILAKLSVVPVRRGYWGNKIGKPHT 173
Score = 108 bits (260), Expect = 2e-24
Identities = 48/79 (60%), Positives = 59/79 (74%)
Frame = +3
Query: 255 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 434
VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF
Sbjct: 174 VPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 233
Query: 435 XXXXXXXXXXXLTPDLWRD 491
LTP+ W++
Sbjct: 234 TFDCLQKTYGFLTPEFWKE 252
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 164 bits (399), Expect = 3e-41
Identities = 74/85 (87%), Positives = 80/85 (94%)
Frame = +1
Query: 1 DFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 180
D +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGA
Sbjct: 88 DHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGA 147
Query: 181 IILAKLSVLPVRRGYWGNKIGKPHT 255
IILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 148 IILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 108 bits (260), Expect = 2e-24
Identities = 48/79 (60%), Positives = 59/79 (74%)
Frame = +3
Query: 255 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 434
VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF
Sbjct: 173 VPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 232
Query: 435 XXXXXXXXXXXLTPDLWRD 491
LTP+ W++
Sbjct: 233 TFDCLQKTYGFLTPEFWKE 251
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 164 bits (399), Expect = 3e-41
Identities = 74/85 (87%), Positives = 80/85 (94%)
Frame = +1
Query: 1 DFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 180
D +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGA
Sbjct: 88 DHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGA 147
Query: 181 IILAKLSVLPVRRGYWGNKIGKPHT 255
IILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 148 IILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 108 bits (260), Expect = 2e-24
Identities = 48/79 (60%), Positives = 59/79 (74%)
Frame = +3
Query: 255 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 434
VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF
Sbjct: 173 VPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 232
Query: 435 XXXXXXXXXXXLTPDLWRD 491
LTP+ W++
Sbjct: 233 TFDCLQKTYGFLTPEFWKE 251
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 164 bits (399), Expect = 3e-41
Identities = 74/85 (87%), Positives = 80/85 (94%)
Frame = +1
Query: 1 DFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 180
D +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGA
Sbjct: 88 DHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGA 147
Query: 181 IILAKLSVLPVRRGYWGNKIGKPHT 255
IILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 148 IILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 108 bits (260), Expect = 2e-24
Identities = 48/79 (60%), Positives = 59/79 (74%)
Frame = +3
Query: 255 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 434
VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF
Sbjct: 173 VPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 232
Query: 435 XXXXXXXXXXXLTPDLWRD 491
LTP+ W++
Sbjct: 233 TFDCLQKTYGFLTPEFWKE 251
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 164 bits (399), Expect = 3e-41
Identities = 74/85 (87%), Positives = 80/85 (94%)
Frame = +1
Query: 1 DFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 180
D +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGA
Sbjct: 88 DHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGA 147
Query: 181 IILAKLSVLPVRRGYWGNKIGKPHT 255
IILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 148 IILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 108 bits (260), Expect = 2e-24
Identities = 48/79 (60%), Positives = 59/79 (74%)
Frame = +3
Query: 255 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 434
VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF
Sbjct: 173 VPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 232
Query: 435 XXXXXXXXXXXLTPDLWRD 491
LTP+ W++
Sbjct: 233 TFDCLQKTYGFLTPEFWKE 251
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 8e-06
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +1
Query: 28 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 207
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 208 PV 213
V
Sbjct: 209 QV 210
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 243 KATHVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 422
K + P + G G+ V L PA GTG+++ + +L+MAGV++ GS L N
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNN 273
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 30.7 bits (66), Expect = 0.73
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 462 HMSWQWQRMWL*QNFPRCQLNHELTCSNPVHQPSEE-AS*ELAQTQYQYHEGQESA 298
+M+ Q Q+ L Q + QL H+ P+ QPS++ A Q Q Q HE + A
Sbjct: 920 YMNQQQQQQQLQQQPQQQQLQHQQQLQQPMSQPSQQLAQSPQQQQQLQQHEQPQQA 975
>At5g36170.2 68418.m04359 peptide chain release factor, putative
similar to SP|P28367 Peptide chain release factor 2
(RF-2) {Bacillus subtilis}; contains Pfam profiles
PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
domain
Length = 455
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 379 IATRQLVVQLAPWEILLKPHTLPLPR-HMPTSLLTCGGISR*LSPILRVQSLRQSLYN 549
+A R + P +LL+P LPL R +P SL SR SPI Q S+ N
Sbjct: 11 LAGRSFAIAGKPKLLLLRPTNLPLLRLSLPLSLPNFSSSSRFNSPIFAAQESNLSVSN 68
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 3.0
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 236 LLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 57
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 56 CTGMILRTSSFR 21
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 94 AFVAIGDNNGHIGLGVKCSKE 156
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At4g03740.1 68417.m00513 hypothetical protein
Length = 345
Score = 27.5 bits (58), Expect = 6.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 263 QGHRQVWFRNSPADSCPSWYWYC 331
+ ++++WFR SCP W C
Sbjct: 60 RNNQEIWFRTFALGSCPHTLWPC 82
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -1
Query: 179 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 57
A A+ H +P + P L P N R+R A CF
Sbjct: 184 AAEKALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKASTCF 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,894,169
Number of Sequences: 28952
Number of extensions: 314800
Number of successful extensions: 752
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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