Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30034
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48040.1 68414.m05354 protein phosphatase 2C-related / PP2C-r...    29   1.8  
At3g43190.1 68416.m04558 sucrose synthase, putative / sucrose-UD...    29   3.2  

>At1g48040.1 68414.m05354 protein phosphatase 2C-related /
           PP2C-related similar to protein phosphatase-2C
           GB:AAC36698 GI:3643085 from [Mesembryanthemum
           crystallinum]
          Length = 377

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -3

Query: 526 GRGRLKKKWMDCVKGDMCKRGVSEEMVYD-RGVWKEKACCIDPR*LGEGQENYEDDVKSY 350
           GR  L     DC +  +C+RGV+ +M +D R  ++ +   I+   LG     +ED   + 
Sbjct: 191 GRHLLVANAGDC-RAVLCRRGVAVDMSFDHRSTYEPERRRIED--LGG---YFEDGYLNG 244

Query: 349 TYFVNTSIGDWTTTNKF 299
              V  +IGDW   N F
Sbjct: 245 VLAVTRAIGDWELKNPF 261


>At3g43190.1 68416.m04558 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative strong similarity to
           SP|P49040 Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP
           glucosyltransferase) {Arabidopsis thaliana} (SUS1)
          Length = 808

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 173 TLKYVLAVEEEHLSHL*PRTLYSNFAN**S*F*SYLGLAKTDENIMNFVQ 24
           TL++ L   EE+L  L P TLYS F +         G   T E ++N ++
Sbjct: 205 TLQHNLRKAEEYLMELKPETLYSEFEHKFQEIGLERGWGDTAERVLNMIR 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,782,849
Number of Sequences: 28952
Number of extensions: 261197
Number of successful extensions: 552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)