Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30041
         (311 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unkn...    31   0.16 
At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)            31   0.22 
At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma...    29   0.50 
At1g69523.1 68414.m07991 UbiE/COQ5 methyltransferase family prot...    27   2.6  
At4g38150.1 68417.m05386 pentatricopeptide (PPR) repeat-containi...    27   3.5  
At5g66850.1 68418.m08428 protein kinase family protein contains ...    26   6.1  
At3g48450.1 68416.m05289 nitrate-responsive NOI protein, putativ...    25   8.1  
At1g53050.1 68414.m06007 protein kinase family protein contains ...    25   8.1  

>At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unknown
           protein chromosome II BAC F6F22 - Arabidopsis
           thaliana,PID:g3687251
          Length = 143

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = +2

Query: 17  KGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAI 196
           +G  +   K K   KP  ++ +   K    R    V   +  N+YR DL KA L R SAI
Sbjct: 66  QGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAI 125

Query: 197 LRSQR 211
            +  R
Sbjct: 126 SKGLR 130


>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
          Length = 143

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = +2

Query: 41  KAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQR 211
           K K   KP  ++ +   K    R    V   +  N+YR DL KA L R SAI +  R
Sbjct: 74  KTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLR 130


>At2g46240.1 68415.m05750 IQ domain-containing protein / BAG
           domain-containing protein contains Pfam profiles
           PF00612: IQ calmodulin-binding motif, PF02179: BAG
           (Apoptosis regulator Bcl-2 protein) domain
          Length = 1043

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 154 HRPMQGYPSSCFSHPPLPEAHQ 219
           H P   Y  SC+ HPP P  +Q
Sbjct: 73  HPPHASYAPSCYVHPPFPVGYQ 94


>At1g69523.1 68414.m07991 UbiE/COQ5 methyltransferase family protein
           low similarity to SP|Q05197 Phosphatidylethanolamine
           N-methyltransferase (EC 2.1.1.17) [Rhodopseudomonas
           sphaeroides] {Rhodobacter sphaeroides}; contains Pfam
           profile PF01209: methlytransferase, UbiE/COQ5 family
          Length = 300

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 171 LPFVVLQPSSAPRGPSKQKRLRQPQP 248
           +PF+ + PS A       KRLR P+P
Sbjct: 63  MPFLPISPSHASTSTEDLKRLRPPKP 88


>At4g38150.1 68417.m05386 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 302

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 145 PLPHRPMQGYPSS-CFSHPPLPEAHQSKK 228
           PLP+RP++G  SS     PP  +AH   K
Sbjct: 48  PLPNRPLRGERSSNSHREPPARQAHNLGK 76


>At5g66850.1 68418.m08428 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K gamma protein kinase GI:2315152
          Length = 716

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 192 PSSAPRGPSKQKRLRQPQPSR 254
           P  +P+  S +K++R PQPSR
Sbjct: 249 PIHSPQPRSPRKQIRSPQPSR 269


>At3g48450.1 68416.m05289 nitrate-responsive NOI protein, putative
           similar to nitrate-induced NOI protein [Zea mays]
           GI:2642213
          Length = 89

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 5   NP-DRKGFTVVYKKAKATRKPAKNLIRRP 88
           NP   +GFTV++ KA+  +K  K  +  P
Sbjct: 20  NPGSAEGFTVIFNKARDDKKTMKTAVAGP 48


>At1g53050.1 68414.m06007 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 694

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 157 RPMQGYPSSCFSHPPLPEAHQSKKG*DSRNQVG 255
           RP+   PSS   +PP  E     +  +SR QVG
Sbjct: 421 RPLPCDPSSLPKYPPSKELDARMRDEESRRQVG 453


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,953,484
Number of Sequences: 28952
Number of extensions: 109632
Number of successful extensions: 250
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)