Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30030
         (349 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01350.2 68415.m00052 quinolinate phosphoribosyl transferase ...    33   0.069
At2g01350.1 68415.m00053 quinolinate phosphoribosyl transferase ...    33   0.069
At5g35760.1 68418.m04284 expressed protein ; expression supporte...    27   4.5  

>At2g01350.2 68415.m00052 quinolinate phosphoribosyl transferase
           family protein contains Pfam profile: PF01729
           quinolinate phosphoribosyl transferase, C-terminal
           domain
          Length = 281

 Score = 32.7 bits (71), Expect = 0.069
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +1

Query: 64  IVVLVALSLMICSGQADPKIPVKSLKKGGKVIAKGFKVLTAAGTAHEV 207
           IV  VAL+ MI     DP + V+ ++K G  + KG K    +G AH++
Sbjct: 21  IVAGVALADMIFE-HVDPSLKVEWMRKDGDYVHKGLKFGKVSGNAHKI 67


>At2g01350.1 68415.m00053 quinolinate phosphoribosyl transferase
           family protein contains Pfam profile: PF01729
           quinolinate phosphoribosyl transferase, C-terminal
           domain
          Length = 348

 Score = 32.7 bits (71), Expect = 0.069
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +1

Query: 64  IVVLVALSLMICSGQADPKIPVKSLKKGGKVIAKGFKVLTAAGTAHEV 207
           IV  VAL+ MI     DP + V+ ++K G  + KG K    +G AH++
Sbjct: 88  IVAGVALADMIFE-HVDPSLKVEWMRKDGDYVHKGLKFGKVSGNAHKI 134


>At5g35760.1 68418.m04284 expressed protein ; expression supported
           by MPSS
          Length = 177

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 152 FPPFFRLLTGIFGSACPLQIINDRATSTTMKY 57
           +PP  +LL GIF     LQI    A S  M Y
Sbjct: 30  YPPITKLLQGIFKYTDKLQICESLAKSGVMIY 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,413,306
Number of Sequences: 28952
Number of extensions: 114301
Number of successful extensions: 215
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)