Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30028
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   133   1e-31
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   130   6e-31
At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH...    33   0.12 
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa...    30   1.2  
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea...    29   3.5  
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    28   6.1  
At4g07690.1 68417.m01209 hypothetical protein includes At2g24900...    28   6.1  
At4g37760.1 68417.m05345 squalene monooxygenase, putative / squa...    27   8.1  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  133 bits (321), Expect = 1e-31
 Identities = 62/88 (70%), Positives = 73/88 (82%), Gaps = 1/88 (1%)
 Frame = +1

Query: 1   KRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWG 177
           KRRATGGK+   RKKRKYE+GR  ANT+L   + +  +R RGGN K+RALRLDTGN+SWG
Sbjct: 10  KRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWG 69

Query: 178 SECSTRKTRIIDVVYNASNNELVRTKPL 261
           SE +TRKTR++DVVYNASNNELVRTK L
Sbjct: 70  SEATTRKTRVLDVVYNASNNELVRTKTL 97



 Score = 83.8 bits (198), Expect = 9e-17
 Identities = 48/96 (50%), Positives = 61/96 (63%), Gaps = 10/96 (10%)
 Frame = +3

Query: 252 KTLVKNAIVVVDATPFRQWYESHYTLPLGR-KKGAKLT-----EAEEAII----NKKRSQ 401
           KTLVK+AIV VDA PF+QWY SHY + LGR KK A  T     E EEA +      K+S 
Sbjct: 95  KTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSN 154

Query: 402 KTARKYLARQRLAKVEGALEEQFHTGRLLACVASRP 509
              RK  +RQ    ++  +E+QF +GRLLAC++SRP
Sbjct: 155 HLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRP 190



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 24/30 (80%), Positives = 28/30 (93%)
 Frame = +2

Query: 506 PGQCGRADGYILEGKELEFYLRKIKSKRAK 595
           PGQCGRADGYILEGKELEFY++KI+ K+ K
Sbjct: 190 PGQCGRADGYILEGKELEFYMKKIQKKKGK 219


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  130 bits (315), Expect = 6e-31
 Identities = 63/88 (71%), Positives = 71/88 (80%), Gaps = 1/88 (1%)
 Frame = +1

Query: 1   KRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWG 177
           KRRATGGK+   RKKRKYELGR  ANT+L   + +  +R RGGN K+RALRLDTGNFSWG
Sbjct: 10  KRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWG 69

Query: 178 SECSTRKTRIIDVVYNASNNELVRTKPL 261
           SE  TRKTRI+DV YNASNNELVRT+ L
Sbjct: 70  SEAVTRKTRILDVAYNASNNELVRTQTL 97



 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 43/86 (50%), Positives = 54/86 (62%)
 Frame = +3

Query: 252 KTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQ 431
           +TLVK+AIV VDA PF+Q Y  HY + +GRKK  +    EE     K+S    RK   RQ
Sbjct: 95  QTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEV----KKSNHVQRKLEMRQ 150

Query: 432 RLAKVEGALEEQFHTGRLLACVASRP 509
               ++  LEEQF +GRLLAC+ASRP
Sbjct: 151 EGRALDSHLEEQFSSGRLLACIASRP 176



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 23/30 (76%), Positives = 28/30 (93%)
 Frame = +2

Query: 506 PGQCGRADGYILEGKELEFYLRKIKSKRAK 595
           PGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 176 PGQCGRADGYILEGKELEFYMKKLQKKKGK 205


>At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative
           (CHX20) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 842

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +3

Query: 354 KLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPVSVVAPMV 533
           +LTE   +II  +R++K    ++ R R  +    +   F   R L  VA RP++ V+P+ 
Sbjct: 497 ELTERSSSIIMVQRARKNGLPFVHRYRHGERHSNVIGGFEAYRQLGRVAVRPITAVSPLP 556

Query: 534 T 536
           T
Sbjct: 557 T 557


>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 585

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 319 CDSYHCLNGVASTTTIAFLTRVLYAPIHC*MHYTQHQ*YGFCELNIPIP 173
           C  Y  L GV S+  +A L+ +   P+   +H+     Y  C L +P P
Sbjct: 492 CFDYLSLGGVFSSGPVALLSGLNPRPLSLVLHFFAVAIYAVCRLMLPFP 540


>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
           family protein similar to Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) {Podospora anserina};
           contains 5 WD-40 repeats (PF00400); similar to  beta
           transducin-like protein HET-E2C*4
           (GP:17225206)[Podospora anserina]
          Length = 530

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 342 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVAS 503
           KKG KLT  ++ ++ K R ++     L  ++ A V   +EE     +L+ CV++
Sbjct: 393 KKGLKLTRHDK-LLKKFRHKEALVSVLEEKKPANVVAVMEELVARRKLMKCVSN 445


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 251 VRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPP 120
           +R+ S LD+L     +RVL V H+    +LPV   + RYL   P
Sbjct: 580 IRSFSALDSLRHLKQLRVLDVSHNHICGELPVD--TTRYLCSSP 621


>At4g07690.1 68417.m01209 hypothetical protein includes At2g24900,
           At5g35040, At3g30500, At4g07690
          Length = 248

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/77 (24%), Positives = 34/77 (44%)
 Frame = -3

Query: 329 QRIMRLIPLPEWSCIYYNNCILDKGFVRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSR 150
           QR   ++   +W  I     I + GFVR+ +     Y    +  + V HSDP+E +  +R
Sbjct: 59  QRYYDMLEENQWKEIRTFGVIENCGFVRSTT---HKYMIEFMNAIEVTHSDPRETVLFNR 115

Query: 149 RSARYLVFPPRERTEWI 99
            +    +      TE++
Sbjct: 116 FTPFDYIIEDTAHTEYL 132


>At4g37760.1 68417.m05345 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 525

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 319 CDSYHCLNGVASTTTIAFLTRVLYAPIHC*MHYTQHQ*YGFCELNIPIP 173
           C  Y  L GV S+  +A L+ +   P+   +H+     +G   L +P+P
Sbjct: 424 CFDYLSLGGVCSSGPVALLSGLNPRPMSLVLHFFAVAIFGVGRLLVPLP 472


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,608,237
Number of Sequences: 28952
Number of extensions: 246455
Number of successful extensions: 698
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)