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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30027
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63300.1 68418.m07944 ribosomal protein S21 family protein          28   4.5  

>At5g63300.1 68418.m07944 ribosomal protein S21 family protein 
          Length = 217

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -3

Query: 522 PRMVASTRSVRTSSHISPVITIL*TSQDQRV*RPAYFVSIKQYIFYFRRSQRNL 361
           P  + S+ S RTS H+S    IL    D  + R AY       + +F+ S  N+
Sbjct: 29  PITLPSSVSARTSQHLSMTTKILTAEHDDVINRVAYPSLANANLVFFKSSYYNV 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,044,296
Number of Sequences: 28952
Number of extensions: 298043
Number of successful extensions: 794
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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