Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30018
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    28   4.3  
At1g27020.1 68414.m03294 expressed protein                             27   7.6  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    27   7.6  

>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 414 DRDRVECCSSLEQESTIKERGLQRQRAKNRLSGDGPLREP 533
           D+D  E CS+ E ES ++E  L +++A N++ G   L  P
Sbjct: 434 DKDNTEHCSAGEVESELEEERLVKRKA-NKIDGRDLLVTP 472


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 173 WENPGVTQLNRLAAHPPFASW 235
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +3

Query: 402  IKRIDRDRVECCSSLEQESTIKERGLQRQRAK 497
            ++ +  + VE C +LE  ST+K+R +++ + +
Sbjct: 1340 LEGLTNELVEACKNLESRSTLKDREIEQLKGR 1371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,888,911
Number of Sequences: 28952
Number of extensions: 278900
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)