Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30017
         (532 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing pro...    30   0.85 
At4g18690.1 68417.m02764 hypothetical protein similar to tumor-r...    30   1.1  
At1g15780.1 68414.m01893 expressed protein                             28   3.4  
At1g20380.1 68414.m02542 prolyl oligopeptidase, putative / proly...    27   6.0  
At5g42470.1 68418.m05170 expressed protein low similarity to BRE...    27   7.9  
At1g63450.1 68414.m07175 exostosin family protein contains Pfam ...    27   7.9  
At1g34000.2 68414.m04216 light stress-responsive one-helix prote...    27   7.9  
At1g34000.1 68414.m04215 light stress-responsive one-helix prote...    27   7.9  

>At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing
           protein / helicase and RNase D C-terminal
           domain-containing protein / HRDC domain-containing
           protein similar to SP|Q01780 Polymyositis/scleroderma
           autoantigen 2 {Homo sapiens}; contains Pfam profiles
           PF00570: HRDC domain, PF01612: 3'-5' exonuclease
          Length = 738

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 146 IHDVLVNEKLKRDLLAFLVVKYEGAILEHDINSAAFH 256
           I+D+LV+     D LAF+ V Y   + + D++S  FH
Sbjct: 46  IYDLLVDVVSTYDFLAFVYVPYRSCLRKLDLSSRDFH 82


>At4g18690.1 68417.m02764 hypothetical protein similar to
           tumor-related protein [Nicotiana glauca x Nicotiana
           langsdorffii] GI:688423
          Length = 368

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 346 HSSKGKPKYKVLSSCPLNNFEEYVEQQVELFKNECKGSVTSSQLVSLEN 492
           H SK   K + L    +N+F++Y E++ EL +  C      S    LEN
Sbjct: 39  HRSKEDHKLEELVGKIVNDFQKYTEKRSELSRRSCSSYFAPSWNSPLEN 87


>At1g15780.1 68414.m01893 expressed protein
          Length = 1335

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 22/80 (27%), Positives = 36/80 (45%)
 Frame = +2

Query: 14  STNAELILSPLLNKALGNISLPQMHPSTVLMDYVPMVTELLNRKIHDVLVNEKLKRDLLA 193
           STN      PLL++ + N +   M  ST L   +P V+ + N     V VN+      +A
Sbjct: 128 STNQSQAPQPLLSQTMQNNTASGMTGSTALPSSMPPVSSITNNNTTSV-VNQNANMQNVA 186

Query: 194 FLVVKYEGAILEHDINSAAF 253
            ++    G   +H ++S  F
Sbjct: 187 GMLQDSSG---QHGLSSNMF 203


>At1g20380.1 68414.m02542 prolyl oligopeptidase, putative / prolyl
           endopeptidase, putative / post-proline cleaving enzyme,
           putative similar to SP|P48147 Prolyl endopeptidase (EC
           3.4.21.26) (Post-proline cleaving enzyme) {Homo
           sapiens}; contains Pfam profiles PF00326: prolyl
           oligopeptidase family, PF02897: Prolyl oligopeptidase,
           N-terminal beta-propeller domain
          Length = 731

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 343 YHSSKGKPKYKVLSSCPLNNFEEYVEQQVELFKNECKGSVTSSQL 477
           YH  K    Y+ L        +E+VE+QV+L  +  K   T  +L
Sbjct: 26  YHGVKVSDPYRWLEDPDAEEVKEFVEKQVQLSDSVLKSCETKEKL 70


>At5g42470.1 68418.m05170 expressed protein low similarity to BRE
           alpha b isoform [Homo sapiens] GI:16326573
          Length = 382

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 101 LMDYVPMVTELLNRKIHDVLVNEKLKRDLLAFLVVKYEGAILEHD 235
           L +Y+P + E L R+IH+ +    L+R  +  L +   G  LE D
Sbjct: 244 LAEYLPHLEETLERQIHEAVAAIDLRRSFIEALSLNL-GRPLEAD 287


>At1g63450.1 68414.m07175 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 641

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 39  HLFLIKPWGTFHYRKCIHLLFLWIMYLW 122
           +LF I    +F YR  + +LFL+++YLW
Sbjct: 35  NLFSIFSARSFLYRVPLTILFLFLIYLW 62


>At1g34000.2 68414.m04216 light stress-responsive one-helix protein
           (OHP2) contains similarity to photosystem II 22 kDa
           protein GI:6006279 from [Arabidopsis thaliana]
          Length = 145

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 216 PSYLTTKNANKSLFNFSLTSTSCIFLFSSSVTIG 115
           PS  ++ +   S F FS T+  C+F+   S T G
Sbjct: 15  PSSSSSSSTASSSFRFSTTTKPCVFIIRCSQTEG 48


>At1g34000.1 68414.m04215 light stress-responsive one-helix protein
           (OHP2) contains similarity to photosystem II 22 kDa
           protein GI:6006279 from [Arabidopsis thaliana]
          Length = 172

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 216 PSYLTTKNANKSLFNFSLTSTSCIFLFSSSVTIG 115
           PS  ++ +   S F FS T+  C+F+   S T G
Sbjct: 15  PSSSSSSSTASSSFRFSTTTKPCVFIIRCSQTEG 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,747,919
Number of Sequences: 28952
Number of extensions: 229033
Number of successful extensions: 574
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)