Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30011
         (413 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22760.1 68415.m02699 basic helix-loop-helix (bHLH) family pr...    27   5.0  
At1g27050.1 68414.m03298 homeobox-leucine zipper family protein ...    27   6.6  
At5g51810.1 68418.m06424 gibberellin 20-oxidase, putative simila...    26   8.7  
At3g06340.1 68416.m00731 DNAJ heat shock N-terminal domain-conta...    26   8.7  

>At2g22760.1 68415.m02699 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 295

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 95  QDFILPNMGLQDITIQLQNVTEPNPRNPPMSV*NVAKLK*NTRLKPQIRF 244
           +DF LP+  L DI     N+ E N  +P  S+ N  +   +++   Q+ F
Sbjct: 3   EDFFLPDFSLVDIDFDF-NIYEENNLSPDESLSNSRRADQSSKFDHQMHF 51


>At1g27050.1 68414.m03298 homeobox-leucine zipper family protein
           contains Pfam profile:PF00046 Homeobox domain and Pfam
           profile:PF00076 RNA recognition motif
          Length = 444

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
 Frame = +2

Query: 14  GLKDK-KYPDRRAMGFPFDRPSXSATSLQDFILPNMGLQDIT-IQLQNVTEP 163
           GL+++  +P+   +GF +D P+ +A++L+   L       +T IQ+ +VTEP
Sbjct: 173 GLENQYSFPELAVLGFYYD-PTLTASNLRQEPLKVTCADQMTQIQISDVTEP 223


>At5g51810.1 68418.m06424 gibberellin 20-oxidase, putative similar
           to gibberellin 20-oxidase GI:1109695, GI:9791186
          Length = 378

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 2   SSFCGLKDKKYPDRRAMGFPFDRPSXSATSLQDFILPNMG 121
           SSF G    K P +  + F F   +  + ++QD+    +G
Sbjct: 136 SSFTGRFSTKLPWKETLSFQFSNDNSGSRTVQDYFSDTLG 175


>At3g06340.1 68416.m00731 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 673

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 2   SSFCGLKDKKYPDRRAMGFPFDRPSXSAT 88
           +++C  +  K+PD+RA   P  RP    T
Sbjct: 243 TTYCFPQQSKFPDQRACSEPHKRPENPPT 271


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,847,904
Number of Sequences: 28952
Number of extensions: 147658
Number of successful extensions: 234
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)