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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00018
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta...   170   1e-42
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)    170   1e-42
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1...   124   5e-29
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta...   122   2e-28
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2...   120   8e-28
At2g20140.1 68415.m02353 26S protease regulatory complex subunit...   120   8e-28
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3...   119   2e-27
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put...   114   7e-26
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5...   113   9e-26
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4...   105   3e-23
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun...   105   3e-23
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)...   104   7e-23
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...   103   2e-22
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ...   103   2e-22
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH...    86   2e-17
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains...    86   3e-17
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ...    85   5e-17
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc...    85   5e-17
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains...    84   1e-16
At3g56690.1 68416.m06306 calmodulin-binding protein identical to...    84   1e-16
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains...    83   3e-16
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains...    82   5e-16
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6...    81   8e-16
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6...    81   8e-16
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond...    81   1e-15
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains...    80   2e-15
At5g58870.1 68418.m07376 FtsH protease, putative contains simila...    79   2e-15
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains...    79   2e-15
At4g23940.1 68417.m03443 FtsH protease, putative contains simila...    79   3e-15
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains...    79   4e-15
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains...    78   6e-15
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains...    78   6e-15
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains...    78   7e-15
At3g47060.1 68416.m05110 FtsH protease, putative contains simila...    78   7e-15
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains...    78   7e-15
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol...    78   7e-15
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH...    77   1e-14
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond...    77   2e-14
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c...    76   3e-14
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ...    75   5e-14
At1g05910.1 68414.m00620 cell division cycle protein 48-related ...    75   5e-14
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-...    75   7e-14
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI...    73   3e-13
At2g26140.1 68415.m03137 FtsH protease, putative contains simila...    73   3e-13
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1...    72   4e-13
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-...    72   5e-13
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-...    71   6e-13
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ...    71   1e-12
At3g02450.1 68416.m00232 cell division protein ftsH, putative si...    71   1e-12
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id...    69   5e-12
At3g16290.1 68416.m02056 FtsH protease, putative contains simila...    66   2e-11
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains...    65   4e-11
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains...    60   2e-09
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ...    57   1e-08
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains...    53   2e-07
At3g04340.1 68416.m00459 FtsH protease family protein similar to...    50   2e-06
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains...    48   7e-06
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains...    48   9e-06
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains...    48   9e-06
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains...    47   1e-05
At1g79560.1 68414.m09275 FtsH protease, putative contains simila...    47   2e-05
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains...    46   4e-05
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains...    45   5e-05
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains...    45   6e-05
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains...    44   1e-04
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ...    42   3e-04
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains...    42   3e-04
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains...    42   5e-04
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains...    42   5e-04
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains...    42   6e-04
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains...    42   6e-04
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains...    41   0.001
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains...    41   0.001
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains...    41   0.001
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains...    40   0.001
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains...    40   0.002
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains...    39   0.004
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S...    39   0.004
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains...    38   0.006
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc...    38   0.006
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains...    38   0.006
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains...    38   0.006
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains...    38   0.006
At1g08270.2 68414.m00912 expressed protein low similarity to SP|...    38   0.006
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains...    38   0.007
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ...    38   0.010
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains...    38   0.010
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ...    36   0.039
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p...    36   0.039
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains...    36   0.039
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ...    36   0.039
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S...    36   0.039
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ...    35   0.052
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a...    35   0.068
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    34   0.090
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ...    34   0.090
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    34   0.090
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1...    34   0.12 
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr...    33   0.16 
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR...    33   0.21 
At2g36380.1 68415.m04464 ABC transporter family protein related ...    33   0.28 
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p...    32   0.36 
At2g37280.1 68415.m04573 ABC transporter family protein similar ...    32   0.36 
At1g08270.1 68414.m00913 expressed protein low similarity to SP|...    32   0.36 
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-...    32   0.48 
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ...    32   0.48 
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s...    32   0.48 
At1g66950.1 68414.m07612 ABC transporter family protein similar ...    32   0.48 
At1g15520.1 68414.m01867 ABC transporter family protein similar ...    32   0.48 
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1...    31   0.64 
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1...    31   0.84 
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ...    31   0.84 
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains...    31   0.84 
At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR...    31   1.1  
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic...    31   1.1  
At4g15215.1 68417.m02332 ABC transporter family protein similar ...    30   1.5  
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel...    30   1.5  
At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR...    30   1.5  
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR...    30   1.9  
At4g15236.1 68417.m02335 ABC transporter family protein similar ...    30   1.9  
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr...    30   1.9  
At2g29940.1 68415.m03642 ABC transporter family protein similar ...    30   1.9  
At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR...    30   1.9  
At1g60700.1 68414.m06833 forkhead-associated domain-containing p...    30   1.9  
At1g15210.1 68414.m01818 ABC transporter family protein Similar ...    30   1.9  
At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containi...    29   2.6  
At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial (...    29   2.6  
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff...    29   2.6  
At4g15230.1 68417.m02333 ABC transporter family protein similar ...    29   2.6  
At3g16340.1 68416.m02066 ABC transporter family protein similar ...    29   2.6  
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s...    29   2.6  
At1g59870.1 68414.m06745 ABC transporter family protein similar ...    29   2.6  
At4g30490.1 68417.m04329 AFG1-like ATPase family protein contain...    29   3.4  
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik...    29   3.4  
At1g73170.1 68414.m08466 expressed protein                             29   3.4  
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ...    29   3.4  
At5g17890.1 68418.m02098 LIM domain-containing protein / disease...    29   4.5  
At5g11710.1 68418.m01368 epsin N-terminal homology (ENTH) domain...    29   4.5  
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR...    29   4.5  
At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyri...    29   4.5  
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t...    28   5.9  
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS...    28   5.9  
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR...    28   5.9  
At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR...    28   5.9  
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,...    28   5.9  
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR...    28   7.9  
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d...    28   7.9  
At4g38870.1 68417.m05504 F-box family protein contains Pfam prof...    28   7.9  
At4g28070.1 68417.m04026 AFG1-like ATPase family protein contain...    28   7.9  
At1g79050.1 68414.m09217 DNA repair protein recA identical to DN...    28   7.9  

>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
           putative almost identical to 26S proteasome AAA-ATPase
           subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
           almost identical to a member of conserved Sug1 CAD
           family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
          Length = 419

 Score =  170 bits (413), Expect = 1e-42
 Identities = 76/84 (90%), Positives = 84/84 (100%)
 Frame = +2

Query: 509 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 688
           PDSTY+M+GGLD+QIKEIKEVIELP+KHPELF++LGIAQPKGVLLYGPPGTGKTLLARAV
Sbjct: 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAV 215

Query: 689 AHHTECTFIRVSGSELVQKFIGEG 760
           AHHT+CTFIRVSGSELVQK+IGEG
Sbjct: 216 AHHTDCTFIRVSGSELVQKYIGEG 239



 Score =  169 bits (412), Expect = 1e-42
 Identities = 81/128 (63%), Positives = 99/128 (77%)
 Frame = +3

Query: 126 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 305
           +GEG   YY+  ++ELQ +  EKS NL RL+AQRNELN++VRMLR         GSYVGE
Sbjct: 28  QGEGLNKYYLQHLDELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 87

Query: 306 VVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLV 485
           VVK M K KVLVKVHPEGK+VVD+DK++DI  +T + RVALRN+SY LH +LP+KVDPLV
Sbjct: 88  VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLV 147

Query: 486 SLMMVEKV 509
           +LM VEKV
Sbjct: 148 NLMKVEKV 155


>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
          Length = 419

 Score =  170 bits (413), Expect = 1e-42
 Identities = 76/84 (90%), Positives = 84/84 (100%)
 Frame = +2

Query: 509 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 688
           PDSTY+M+GGLD+QIKEIKEVIELP+KHPELF++LGIAQPKGVLLYGPPGTGKTLLARAV
Sbjct: 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAV 215

Query: 689 AHHTECTFIRVSGSELVQKFIGEG 760
           AHHT+CTFIRVSGSELVQK+IGEG
Sbjct: 216 AHHTDCTFIRVSGSELVQKYIGEG 239



 Score =  168 bits (409), Expect = 3e-42
 Identities = 80/128 (62%), Positives = 99/128 (77%)
 Frame = +3

Query: 126 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 305
           +GEG + YY+  I ELQ  + +K+ NL RL+AQRNELN++VRMLR         GSYVGE
Sbjct: 28  QGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 87

Query: 306 VVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLV 485
           VVK M K KVLVKVHPEGK+VVD+DK++DI  +T + RVALRN+SY LH +LP+KVDPLV
Sbjct: 88  VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLV 147

Query: 486 SLMMVEKV 509
           +LM VEKV
Sbjct: 148 NLMKVEKV 155


>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
           similar to 26S proteasome ATPase subunit GI:1395190 from
           [Spinacia oleracea]
          Length = 426

 Score =  124 bits (300), Expect = 5e-29
 Identities = 58/86 (67%), Positives = 69/86 (80%)
 Frame = +2

Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
           E PD TY  VGG  +QI++++EV+ELP+ HPE F  LGI  PKGVL YGPPGTGKTLLAR
Sbjct: 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLAR 220

Query: 683 AVAHHTECTFIRVSGSELVQKFIGEG 760
           AVA+ T+  FIRV GSELVQK++GEG
Sbjct: 221 AVANRTDACFIRVIGSELVQKYVGEG 246



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 303 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDP 479
           +++ P  +  K ++ V    KFVV L   V   D+    RV +    Y +   LP K+DP
Sbjct: 93  KIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152

Query: 480 LVSLMMVEK 506
            V++M VE+
Sbjct: 153 SVTMMTVEE 161


>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
           putative similar to  26S proteasome AAA-ATPase subunit
           RPT1 SP:Q41365 from [Spinacia oleracea]
          Length = 464

 Score =  122 bits (295), Expect = 2e-28
 Identities = 57/86 (66%), Positives = 69/86 (80%)
 Frame = +2

Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
           E PD+TY  +GG  +QI++I+EV+ELP+ HPE F  LGI  PKGVL YGPPG+GKTL+AR
Sbjct: 198 EKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVAR 257

Query: 683 AVAHHTECTFIRVSGSELVQKFIGEG 760
           AVA+ T   FIRV GSELVQK+IGEG
Sbjct: 258 AVANRTGACFIRVVGSELVQKYIGEG 283



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +3

Query: 303 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDP 479
           +++ P  +  K +V +   GK+VV L       D+ A  RV +  + Y +   LP K+DP
Sbjct: 130 QIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDP 189

Query: 480 LVSLMMVEK 506
            V++M VE+
Sbjct: 190 SVTMMTVEE 198


>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
           almost identical to 26S proteasome AAA-ATPase subunit
           RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
           melanogaster 26S proteasome subunit 4 ATPase,
           PID:g1066065
          Length = 443

 Score =  120 bits (290), Expect = 8e-28
 Identities = 52/86 (60%), Positives = 71/86 (82%)
 Frame = +2

Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
           ++P  +Y  +GGL+ QI+EIKE +ELP+ HPEL++ +GI  PKGV+LYG PGTGKTLLA+
Sbjct: 181 KAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK 240

Query: 683 AVAHHTECTFIRVSGSELVQKFIGEG 760
           AVA+ T  TF+RV GSEL+QK++G+G
Sbjct: 241 AVANSTSATFLRVVGSELIQKYLGDG 266



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 35/139 (25%), Positives = 68/139 (48%)
 Frame = +3

Query: 90  MTLTTKMEVDTVKGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXX 269
           +T +TK ++  +K E  + Y + + E     VA + + L+  + +  E  +KV  LR   
Sbjct: 55  VTPSTKCKLRLLKLERIKDYLLMEEE----FVANQ-ERLKPQEEKAEEDRSKVDDLRGTP 109

Query: 270 XXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTL 449
                    VG + + +D+   +V      ++ V +   VD + +   C + + N+  ++
Sbjct: 110 MS-------VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSV 162

Query: 450 HKILPNKVDPLVSLMMVEK 506
             IL ++VDP+VS+M VEK
Sbjct: 163 VGILQDEVDPMVSVMKVEK 181


>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
           putative similar to Swiss-Prot:P48601 26S protease
           regulatory subunit 4 (P26S4) [Drosophila melanogaster]
          Length = 443

 Score =  120 bits (290), Expect = 8e-28
 Identities = 52/86 (60%), Positives = 71/86 (82%)
 Frame = +2

Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
           ++P  +Y  +GGL+ QI+EIKE +ELP+ HPEL++ +GI  PKGV+LYG PGTGKTLLA+
Sbjct: 181 KAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK 240

Query: 683 AVAHHTECTFIRVSGSELVQKFIGEG 760
           AVA+ T  TF+RV GSEL+QK++G+G
Sbjct: 241 AVANSTSATFLRVVGSELIQKYLGDG 266



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 35/139 (25%), Positives = 68/139 (48%)
 Frame = +3

Query: 90  MTLTTKMEVDTVKGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXX 269
           +T +TK ++  +K E  + Y + + E     VA + + L+  + +  E  +KV  LR   
Sbjct: 55  VTPSTKCKLRLLKLERIKDYLLMEEE----FVANQ-ERLKPQEEKAEEDRSKVDDLRGTP 109

Query: 270 XXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTL 449
                    VG + + +D+   +V      ++ V +   VD + +   C + + N+  ++
Sbjct: 110 MS-------VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSV 162

Query: 450 HKILPNKVDPLVSLMMVEK 506
             IL ++VDP+VS+M VEK
Sbjct: 163 VGILQDEVDPMVSVMKVEK 181


>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
           identical to 26S proteasome AAA-ATPase subunit RPT3
           GI:6652882 from [Arabidopsis thaliana]
          Length = 408

 Score =  119 bits (287), Expect = 2e-27
 Identities = 53/86 (61%), Positives = 67/86 (77%)
 Frame = +2

Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
           E PD +Y  +GG D Q +EI+E +ELP+ H EL+  +GI  P+GVLLYGPPGTGKT+LA+
Sbjct: 148 EKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 207

Query: 683 AVAHHTECTFIRVSGSELVQKFIGEG 760
           AVA+HT   FIRV GSE VQK++GEG
Sbjct: 208 AVANHTTAAFIRVVGSEFVQKYLGEG 233


>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
           putative identical to SP:O04019 from [Arabidopsis
           thaliana]
          Length = 423

 Score =  114 bits (274), Expect = 7e-26
 Identities = 57/107 (53%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
 Frame = +2

Query: 443 YLTQNTTQQSRSSCV-AHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI 619
           YL  +T      S V A +  E P   Y  +GGL+KQI+E+ E I LP+ H E F+ LGI
Sbjct: 142 YLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGI 201

Query: 620 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEG 760
             PKGVLLYGPPGTGKTL+ARA A  T  TF++++G +LVQ FIG+G
Sbjct: 202 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDG 248


>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
           identical to GB:AAF22525 GI:6652886 from [Arabidopsis
           thaliana]
          Length = 424

 Score =  113 bits (273), Expect = 9e-26
 Identities = 56/107 (52%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
 Frame = +2

Query: 443 YLTQNTTQQSRSSCV-AHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI 619
           YL  +T      S V A +  E P   Y  +GGL+KQI+E+ E I LP+ H E F+ LG+
Sbjct: 143 YLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGV 202

Query: 620 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEG 760
             PKGVLLYGPPGTGKTL+ARA A  T  TF++++G +LVQ FIG+G
Sbjct: 203 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDG 249


>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
           gb|AAF22524.1
          Length = 399

 Score =  105 bits (252), Expect = 3e-23
 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
 Frame = +2

Query: 503 ESPDS-TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 679
           E P + +Y  VGGL  QI+E++E IELP+ +PELF  +GI  PKGVLLYGPPGTGKTLLA
Sbjct: 131 EDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 190

Query: 680 RAVAHHTECTFIRVSGSELVQKFIGE 757
           RA+A + +  F++V  S ++ K+IGE
Sbjct: 191 RAIASNIDANFLKVVSSAIIDKYIGE 216



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 33/113 (29%), Positives = 60/113 (53%)
 Frame = +3

Query: 165 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVK 344
           +EL+  V    +NLR  + + N+    ++ L+         G  +GEV++P+D ++++VK
Sbjct: 26  KELESRVRTARENLRGAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDNERLIVK 78

Query: 345 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVE 503
                ++VV     VD   +T+  RV L   + T+ + LP +VDP+V  M+ E
Sbjct: 79  ASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHE 131


>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
           p42D, putative similar to 26S proteasome regulatory
           complex subunit p42D [Drosophila melanogaster]
           gi|6434958|gb|AAF08391
          Length = 399

 Score =  105 bits (252), Expect = 3e-23
 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
 Frame = +2

Query: 503 ESPDS-TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 679
           E P + +Y  VGGL  QI+E++E IELP+ +PELF  +GI  PKGVLLYGPPGTGKTLLA
Sbjct: 131 EDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 190

Query: 680 RAVAHHTECTFIRVSGSELVQKFIGE 757
           RA+A + +  F++V  S ++ K+IGE
Sbjct: 191 RAIASNIDANFLKVVSSAIIDKYIGE 216



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 33/113 (29%), Positives = 60/113 (53%)
 Frame = +3

Query: 165 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVK 344
           +EL+  V    +NLR  + + N+    ++ L+         G  +GEV++P+D ++++VK
Sbjct: 26  KELESRVRTARENLRAAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDNERLIVK 78

Query: 345 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVE 503
                ++VV     VD   +T+  RV L   + T+ + LP +VDP+V  M+ E
Sbjct: 79  ASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHE 131


>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
           (CDC48) identical to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}
          Length = 809

 Score =  104 bits (249), Expect = 7e-23
 Identities = 44/88 (50%), Positives = 65/88 (73%)
 Frame = +2

Query: 494 DGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 673
           D     D  Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+  PKG+LLYGPPG+GKTL
Sbjct: 197 DEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTL 256

Query: 674 LARAVAHHTECTFIRVSGSELVQKFIGE 757
           +ARAVA+ T   F  ++G E++ K  GE
Sbjct: 257 IARAVANETGAFFFCINGPEIMSKLAGE 284



 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 39/85 (45%), Positives = 59/85 (69%)
 Frame = +2

Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
           E P+ ++  +GGL+   +E++E ++ PV+HPE F+  G++  KGVL YGPPG GKTLLA+
Sbjct: 473 EVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 532

Query: 683 AVAHHTECTFIRVSGSELVQKFIGE 757
           A+A+  +  FI V G EL+  + GE
Sbjct: 533 AIANECQANFISVKGPELLTMWFGE 557


>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score =  103 bits (246), Expect = 2e-22
 Identities = 42/79 (53%), Positives = 63/79 (79%)
 Frame = +2

Query: 521 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 700
           Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+  PKG+LLYGPPG+GKTL+ARAVA+ T
Sbjct: 206 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 265

Query: 701 ECTFIRVSGSELVQKFIGE 757
              F  ++G E++ K  GE
Sbjct: 266 GAFFFCINGPEIMSKLAGE 284



 Score = 94.3 bits (224), Expect = 8e-20
 Identities = 40/85 (47%), Positives = 60/85 (70%)
 Frame = +2

Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
           E P+ ++E +GGL+   +E++E ++ PV+HPE F+  G++  KGVL YGPPG GKTLLA+
Sbjct: 473 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 532

Query: 683 AVAHHTECTFIRVSGSELVQKFIGE 757
           A+A+  +  FI V G EL+  + GE
Sbjct: 533 AIANECQANFISVKGPELLTMWFGE 557


>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain
          Length = 815

 Score =  103 bits (246), Expect = 2e-22
 Identities = 42/79 (53%), Positives = 63/79 (79%)
 Frame = +2

Query: 521 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 700
           Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+  PKG+LLYGPPG+GKTL+ARAVA+ T
Sbjct: 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 266

Query: 701 ECTFIRVSGSELVQKFIGE 757
              F  ++G E++ K  GE
Sbjct: 267 GAFFFCINGPEIMSKLAGE 285



 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 42/102 (41%), Positives = 64/102 (62%)
 Frame = +2

Query: 452 QNTTQQSRSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 631
           Q     S  S +     E P+ ++E +GGL+   +E++E ++ PV+HPE F+  G++  K
Sbjct: 457 QTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSK 516

Query: 632 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGE 757
           GVL YGPPG GKTLLA+A+A+  +  FI + G EL+  + GE
Sbjct: 517 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 558


>At5g15250.1 68418.m01786 FtsH protease, putative similar to
           FtsH-like protein Pftf precursor GI:4325041 from
           [Nicotiana tabacum]
          Length = 687

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 41/81 (50%), Positives = 56/81 (69%)
 Frame = +2

Query: 518 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 697
           T+E V G+D+  ++ +E++E  +K PE F ALG   PKGVLL GPPGTGKTLLA+A+A  
Sbjct: 221 TFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGE 279

Query: 698 TECTFIRVSGSELVQKFIGEG 760
               F  +SGSE ++ F+G G
Sbjct: 280 AGVPFFSLSGSEFIEMFVGVG 300


>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
            profile PF00004: ATPase, AAA family
          Length = 1122

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 39/87 (44%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
 Frame = +2

Query: 512  DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAV 688
            D T++ +G L+K    +KE++ LP++ PELF    + +P KG+LL+GPPGTGKT+LA+AV
Sbjct: 816  DVTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGPPGTGKTMLAKAV 875

Query: 689  AHHTECTFIRVSGSELVQKFIGEGREW 769
            A   +  FI +S S +  K+ GEG ++
Sbjct: 876  AKEADANFINISMSSITSKWFGEGEKY 902


>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
           dependent protease VAR2 GI:7650138 from [Arabidopsis
           thaliana]
          Length = 695

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 41/81 (50%), Positives = 55/81 (67%)
 Frame = +2

Query: 518 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 697
           T++ V G+D+  ++  EV+E  +K PE F A+G   PKGVLL GPPGTGKTLLA+A+A  
Sbjct: 225 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGE 283

Query: 698 TECTFIRVSGSELVQKFIGEG 760
               F  +SGSE V+ F+G G
Sbjct: 284 AGVPFFSISGSEFVEMFVGVG 304


>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
           dependent protease GI:7650138 from [Arabidopsis
           thaliana]
          Length = 685

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 41/81 (50%), Positives = 55/81 (67%)
 Frame = +2

Query: 518 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 697
           T++ V G+D+  ++  EV+E  +K PE F A+G   PKGVLL GPPGTGKTLLA+A+A  
Sbjct: 218 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGE 276

Query: 698 TECTFIRVSGSELVQKFIGEG 760
               F  +SGSE V+ F+G G
Sbjct: 277 AGVPFFSISGSEFVEMFVGVG 297


>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family; similar to Spastin
            (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
            (Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
            mitochondrial sorting protein 1 (MSP1) protein
            (TAT-binding homolog 4) (Swiss-Prot:P28737)
            [Saccharomyces cerevisiae]
          Length = 1265

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 37/85 (43%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
 Frame = +2

Query: 518  TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 694
            +++ +G L+   + +KE++ LP++ PELFD   + +P KG+LL+GPPGTGKT+LA+AVA 
Sbjct: 961  SFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLFGPPGTGKTMLAKAVAT 1020

Query: 695  HTECTFIRVSGSELVQKFIGEGREW 769
                 FI +S S +  K+ GEG ++
Sbjct: 1021 EAGANFINISMSSITSKWFGEGEKY 1045


>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
            calmodulin-binding protein GI:6760428 from [Arabidopsis
            thaliana]
          Length = 1022

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 39/105 (37%), Positives = 59/105 (56%)
 Frame = +2

Query: 452  QNTTQQSRSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 631
            +N   + R S +     E P   +E VGG ++   ++ E +E P KH + F  +G   P 
Sbjct: 700  ENAKTKIRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPS 759

Query: 632  GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGRE 766
            G+L++GPPG  KTL+ARAVA   +  F+ V G EL  K++GE  +
Sbjct: 760  GILMFGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEK 804



 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 33/91 (36%), Positives = 53/91 (58%)
 Frame = +2

Query: 494 DGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 673
           D  E+       +GGL K+   ++++I+       L  +LG+   KGVL++GPPGTGKT 
Sbjct: 375 DEGENVGCEISKLGGLSKEYAILRDIIDSSSIKNSL-SSLGLRPTKGVLIHGPPGTGKTS 433

Query: 674 LARAVAHHTECTFIRVSGSELVQKFIGEGRE 766
           LAR  A H+   F  V+G E++ +++GE  +
Sbjct: 434 LARTFARHSGVNFFSVNGPEIISQYLGESEK 464


>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 941

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 39/86 (45%), Positives = 56/86 (65%)
 Frame = +2

Query: 509 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 688
           P+  ++ VGGL+     I + ++LP+ H +LF + G+ +  GVLLYGPPGTGKTLLA+AV
Sbjct: 653 PNVKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAV 711

Query: 689 AHHTECTFIRVSGSELVQKFIGEGRE 766
           A      F+ V G EL+  +IGE  +
Sbjct: 712 ATECSLNFLSVKGPELINMYIGESEK 737


>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 820

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 35/83 (42%), Positives = 52/83 (62%)
 Frame = +2

Query: 509 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 688
           PD  ++ VGGLD    +    I  P+K P+++ A G+    G LLYGPPG GKTL+A+A 
Sbjct: 523 PDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKAA 582

Query: 689 AHHTECTFIRVSGSELVQKFIGE 757
           A+     F+ + G+EL+ K++GE
Sbjct: 583 ANEAGANFMHIKGAELLNKYVGE 605



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 31/91 (34%), Positives = 53/91 (58%)
 Frame = +2

Query: 494 DGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 673
           +G + P  T++  GG+ K + E++  +  P+ +PE F  +G+  P G+L +GPPG GKT 
Sbjct: 225 EGTKGP--TFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTK 282

Query: 674 LARAVAHHTECTFIRVSGSELVQKFIGEGRE 766
           LA A+A+     F ++S +E++    G   E
Sbjct: 283 LANAIANEAGVPFYKISATEVISGVSGASEE 313


>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
           subunit [Strongylocentrotus purpuratus] GI:3098603;
           contains Pfam profile PF00004: ATPase AAA family
          Length = 393

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 37/89 (41%), Positives = 58/89 (65%)
 Frame = +2

Query: 500 RESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 679
           R +P+  +E + GL+   K +KE + +P+K+P  F+ L +   KG+LL+GPPGTGKT+LA
Sbjct: 104 RGNPNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLA 162

Query: 680 RAVAHHTECTFIRVSGSELVQKFIGEGRE 766
           +AVA     TF  +S S +V K+ G+  +
Sbjct: 163 KAVATECNTTFFNISASSVVSKWRGDSEK 191


>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
           subunit [Strongylocentrotus purpuratus] GI:3098603;
           contains Pfam profile PF00004: ATPase AAA family
          Length = 384

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 37/89 (41%), Positives = 58/89 (65%)
 Frame = +2

Query: 500 RESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 679
           R +P+  +E + GL+   K +KE + +P+K+P  F+ L +   KG+LL+GPPGTGKT+LA
Sbjct: 95  RGNPNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLA 153

Query: 680 RAVAHHTECTFIRVSGSELVQKFIGEGRE 766
           +AVA     TF  +S S +V K+ G+  +
Sbjct: 154 KAVATECNTTFFNISASSVVSKWRGDSEK 182


>At5g53540.1 68418.m06653 MSP1 protein, putative /
           intramitochondrial sorting protein, putative similar to
           Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
           [Saccharomyces cerevisiae]; contains Pfam domain,
           PF00004: ATPase, AAA family
          Length = 403

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 39/86 (45%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
 Frame = +2

Query: 512 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAV 688
           D  +  +GGL+   + + E++ LP+K PELF    +  P KGVLLYGPPGTGKT+LA+A+
Sbjct: 83  DVEFGSIGGLESIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAI 142

Query: 689 AHHTECTFIRVSGSELVQKFIGEGRE 766
           A  +E  FI V  S L+ K+ G+ ++
Sbjct: 143 ARESEAVFINVKVSNLMSKWFGDAQK 168


>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 603

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 35/86 (40%), Positives = 56/86 (65%)
 Frame = +2

Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
           E P  T++ VGGL    K++++ +E P+KH   F  +GI+  +G+LL+GPPG  KT LA+
Sbjct: 279 EIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLAK 338

Query: 683 AVAHHTECTFIRVSGSELVQKFIGEG 760
           A A+  + +F  +S +EL   ++GEG
Sbjct: 339 AAANAAQASFFSLSCAELFSMYVGEG 364



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 29/79 (36%), Positives = 47/79 (59%)
 Frame = +2

Query: 530 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 709
           +GG ++ ++ ++E+I  P ++P     LG+  P+G+LLYGPPGTGKT L RAV    +  
Sbjct: 24  IGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAH 83

Query: 710 FIRVSGSELVQKFIGEGRE 766
            I +S   + +   GE  +
Sbjct: 84  LIVLSPHSVHRAHAGESEK 102


>At5g58870.1 68418.m07376 FtsH protease, putative contains
           similarity to cell division protein FtsH homolog 3
           SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
           sp.}
          Length = 806

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 46/109 (42%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
 Frame = +2

Query: 449 TQNTTQQ--SRSSCVAHDGRESPDS---TYEMVGGLDKQIKEIKEVIELPVKHPELFDAL 613
           +Q+TT Q  +R S     G+ S D    T+  V G+D+  +E++E++E  +K+P+ +  L
Sbjct: 299 SQSTTGQLRTRKSGGPGGGKVSGDGETITFADVAGVDEAKEELEEIVEF-LKNPDRYVRL 357

Query: 614 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEG 760
           G   P+GVLL G PGTGKTLLA+AVA  ++  FI  S SE V+ ++G G
Sbjct: 358 GARPPRGVLLVGLPGTGKTLLAKAVAGESDVPFISCSASEFVELYVGMG 406


>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family; similar to
            mitochondrial sorting protein 1 (MSP1) (TAT-binding
            homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
          Length = 1252

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 36/85 (42%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
 Frame = +2

Query: 518  TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 694
            ++  +G L+     +KE++ LP++ PELF    + +P KG+LL+GPPGTGKT+LA+AVA 
Sbjct: 948  SFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILLFGPPGTGKTMLAKAVAT 1007

Query: 695  HTECTFIRVSGSELVQKFIGEGREW 769
                 FI +S S +  K+ GEG ++
Sbjct: 1008 EAGANFINISMSSITSKWFGEGEKY 1032


>At4g23940.1 68417.m03443 FtsH protease, putative contains
           similarity to zinc dependent protease GI:7650138 from
           [Arabidopsis thaliana]
          Length = 946

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 35/77 (45%), Positives = 55/77 (71%)
 Frame = +2

Query: 530 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 709
           V G+D+ + E++E+++  +K+P+LFD +GI  P GVLL GPPG GKTL+A+A+A      
Sbjct: 432 VAGIDEAVDELQELVKY-LKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 490

Query: 710 FIRVSGSELVQKFIGEG 760
           F +++GSE V+  +G G
Sbjct: 491 FYQMAGSEFVEVLVGVG 507


>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 640

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
 Frame = +2

Query: 521 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHH 697
           +E +G L+   K + E++ LP++ PELF    + +P KG+LL+GPPGTGKTLLA+A+A  
Sbjct: 350 FEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGPPGTGKTLLAKALATE 409

Query: 698 TECTFIRVSGSELVQKFIGEGRE 766
               FI ++GS L  K+ G+  +
Sbjct: 410 AGANFISITGSTLTSKWFGDAEK 432


>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 829

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 36/86 (41%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
 Frame = +2

Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLA 679
           E  + T++ +G LD+  + ++E++ LP++ P+LF   G+ +P +G+LL+GPPGTGKT+LA
Sbjct: 514 EEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKPCRGILLFGPPGTGKTMLA 572

Query: 680 RAVAHHTECTFIRVSGSELVQKFIGE 757
           +A+A     +FI VS S +  K+ GE
Sbjct: 573 KAIAKEAGASFINVSMSTITSKWFGE 598


>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 824

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 36/86 (41%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
 Frame = +2

Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLA 679
           E  + T++ +G LD+  + ++E++ LP++ P+LF   G+ +P +G+LL+GPPGTGKT+LA
Sbjct: 509 EEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKPCRGILLFGPPGTGKTMLA 567

Query: 680 RAVAHHTECTFIRVSGSELVQKFIGE 757
           +A+A     +FI VS S +  K+ GE
Sbjct: 568 KAIAKEAGASFINVSMSTITSKWFGE 593


>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 726

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 34/81 (41%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
 Frame = +2

Query: 518 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 694
           T+  +G LD+  + ++E++ LP++ P+LF   G+ +P +G+LL+GPPGTGKT++A+A+A+
Sbjct: 412 TFADIGSLDETKESLQELVMLPLRRPDLFKG-GLLKPCRGILLFGPPGTGKTMMAKAIAN 470

Query: 695 HTECTFIRVSGSELVQKFIGE 757
               +FI VS S +  K+ GE
Sbjct: 471 EAGASFINVSMSTITSKWFGE 491


>At3g47060.1 68416.m05110 FtsH protease, putative contains
           similarity to FtsH protease GI:13183728 from [Medicago
           sativa]
          Length = 802

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 38/81 (46%), Positives = 55/81 (67%)
 Frame = +2

Query: 518 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 697
           T+  V G+D+  +E++E++E  +++PE +  LG   P+GVLL G PGTGKTLLA+AVA  
Sbjct: 323 TFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 381

Query: 698 TECTFIRVSGSELVQKFIGEG 760
            E  FI  S SE V+ ++G G
Sbjct: 382 AEVPFISCSASEFVELYVGMG 402


>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 439

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 35/83 (42%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
 Frame = +2

Query: 521 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHH 697
           ++ +G L+   K + E++ LP++ PELF    + +P KG+LL+GPPGTGKTLLA+A+A  
Sbjct: 149 FDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILLFGPPGTGKTLLAKALATE 208

Query: 698 TECTFIRVSGSELVQKFIGEGRE 766
               FI ++GS L  K+ G+  +
Sbjct: 209 AGANFISITGSTLTSKWFGDAEK 231


>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
           sorting protein-related similar to SP|P46467 SKD1
           protein (Vacuolar sorting protein 4b) {Mus musculus};
           contains Pfam profiles PF00004: ATPase AAA family,
           PF04212: MIT domain
          Length = 435

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
 Frame = +2

Query: 500 RESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLL 676
           RE P+  +  V GL+   + ++E + LPVK P+ F   G  +P +  LLYGPPGTGK+ L
Sbjct: 124 REKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFT--GKRRPWRAFLLYGPPGTGKSYL 181

Query: 677 ARAVAHHTECTFIRVSGSELVQKFIGEGRE 766
           A+AVA   + TF  VS S+LV K++GE  +
Sbjct: 182 AKAVATEADSTFFSVSSSDLVSKWMGESEK 211


>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
           protease GI:13183728 from [Medicago sativa]
          Length = 704

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
 Frame = +2

Query: 500 RESPDS--TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 673
           +E P++  T+  V G D+   E++EV++  +K+P+ + ALG   PKG LL GPPGTGKTL
Sbjct: 240 QEVPETGVTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTL 298

Query: 674 LARAVAHHTECTFIRVSGSELVQKFIGEG 760
           LARAVA      F   + SE V+ F+G G
Sbjct: 299 LARAVAGEAGVPFFSCAASEFVELFVGVG 327


>At4g27680.1 68417.m03980 MSP1 protein, putative /
           intramitochondrial sorting protein, putative similar to
           Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
           [Saccharomyces cerevisiae]; contains Pfam domain,
           PF00004: ATPase, AAA family
          Length = 398

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
 Frame = +2

Query: 512 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAV 688
           D  +  +GGL+   + + E++ LP+K PELF    +  P KGVLLYGPPGTGKT+LA+A+
Sbjct: 80  DVEFGSIGGLETIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAI 139

Query: 689 AHHTECTFIRVSGSELVQKFIGEGRE 766
           A  +   FI V  S L+ K+ G+ ++
Sbjct: 140 AKESGAVFINVRVSNLMSKWFGDAQK 165


>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
           chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
           division protein ftsH homolog 1, chloroplast            
           precursor (EC 3.4.24.-) [Arabidopsis thaliana]
          Length = 716

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
 Frame = +2

Query: 500 RESPDS--TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 673
           +E P++  ++  V G D+   E++EV++  +K+P+ + ALG   PKG LL GPPGTGKTL
Sbjct: 252 QEVPETGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTL 310

Query: 674 LARAVAHHTECTFIRVSGSELVQKFIGEG 760
           LARAVA      F   + SE V+ F+G G
Sbjct: 311 LARAVAGEAGVPFFSCAASEFVELFVGVG 339


>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
           SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
           Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
           domain
          Length = 487

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
 Frame = +2

Query: 506 SPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLAR 682
           SP   ++ V GL+   + + E++ LP K  +LF   G+ +P +G+LL+GPPG GKT+LA+
Sbjct: 210 SPSVKWDDVAGLNGAKQALLEMVILPAKRRDLFT--GLRRPARGLLLFGPPGNGKTMLAK 267

Query: 683 AVAHHTECTFIRVSGSELVQKFIGEGRE 766
           AVA  ++ TF  VS S L  K++GE  +
Sbjct: 268 AVASESQATFFNVSASSLTSKWVGEAEK 295


>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
           CDC48-related similar to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}; contains Pfam
           profiles PF00004: ATPase AAA family, PF00439:
           Bromodomain
          Length = 1210

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 35/87 (40%), Positives = 57/87 (65%), Gaps = 5/87 (5%)
 Frame = +2

Query: 512 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 691
           D  ++ +GGL + I ++KE++  P+ +PE F +  I  P+GVLL GPPGTGKTL+ARA+A
Sbjct: 377 DINFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLLCGPPGTGKTLIARALA 436

Query: 692 -----HHTECTFIRVSGSELVQKFIGE 757
                   + +F    G++++ K++GE
Sbjct: 437 CAASKAGQKVSFYMRKGADVLSKWVGE 463


>At2g29080.1 68415.m03535 FtsH protease, putative similar to
           AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
           contains Pfam profiles PF01434: Peptidase family M41,
           PF00004: ATPase AAA family
          Length = 809

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 35/80 (43%), Positives = 53/80 (66%)
 Frame = +2

Query: 521 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 700
           ++ V G D+  +EI E +   +K+P+ ++ LG   PKG LL GPPGTGKTLLA+A A  +
Sbjct: 321 FKDVAGCDEAKQEIMEFVHF-LKNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 379

Query: 701 ECTFIRVSGSELVQKFIGEG 760
              F+ +SGS+ ++ F+G G
Sbjct: 380 GVPFLSISGSDFMEMFVGVG 399


>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
           SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
           contains Pfam domain, PF00004: ATPase, AAA family
          Length = 287

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
 Frame = +2

Query: 509 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARA 685
           P+  ++ + GL+   K + E++  P+  P++F   G   P KG+LL+GPPGTGKT++ +A
Sbjct: 5   PNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFK--GCRSPGKGLLLFGPPGTGKTMIGKA 62

Query: 686 VAHHTECTFIRVSGSELVQKFIGEGRE 766
           +A   + TF  +S S L  K+IGEG +
Sbjct: 63  IAGEAKATFFYISASSLTSKWIGEGEK 89


>At2g26140.1 68415.m03137 FtsH protease, putative contains
           similarity to YME1 GI:295582, a member of the
           ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
           genes from [Saccharomyces cerevisiae]
          Length = 717

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 36/77 (46%), Positives = 49/77 (63%)
 Frame = +2

Query: 530 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 709
           V G+D+   E++E++   ++ P+ F  LG   PKGVLL GPPGTGKT+LARA+A      
Sbjct: 229 VKGVDEAKAELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP 287

Query: 710 FIRVSGSELVQKFIGEG 760
           F   SGSE  + F+G G
Sbjct: 288 FFSCSGSEFEEMFVGVG 304


>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
           (KTN1) [Arabidopsis thaliana] GI:14133602
          Length = 523

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
 Frame = +2

Query: 506 SPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLAR 682
           +P   ++ V GL +  + ++E + LP+  PE F   GI +P KGVL++GPPGTGKTLLA+
Sbjct: 233 TPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKTLLAK 290

Query: 683 AVAHHTECTFIRVSGSELVQKFIGE 757
           AVA     TF  VS + L  K+ GE
Sbjct: 291 AVATECGTTFFNVSSATLASKWRGE 315


>At1g07510.1 68414.m00804 FtsH protease, putative similar to
           AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
           contains Pfam profiles PF01434: Peptidase family M41,
           PF00004: ATPase AAA family
          Length = 813

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 33/80 (41%), Positives = 53/80 (66%)
 Frame = +2

Query: 521 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 700
           ++ V G ++  +EI E +   +++P+ ++ LG   PKG LL GPPGTGKTLLA+A A  +
Sbjct: 326 FKDVAGCEEAKQEIMEFVHF-LQNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 384

Query: 701 ECTFIRVSGSELVQKFIGEG 760
              F+ +SGS+ ++ F+G G
Sbjct: 385 AVPFLSISGSDFMEMFVGVG 404


>At5g53170.1 68418.m06610 FtsH protease, putative similar to
           ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
           musculus]
          Length = 806

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 37/81 (45%), Positives = 51/81 (62%)
 Frame = +2

Query: 518 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 697
           T++ V G D   +E++EV+E  +K+P  F  LG   PKG+LL G PGTGKTLLA+A+A  
Sbjct: 360 TFKDVKGCDDAKQELEEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 418

Query: 698 TECTFIRVSGSELVQKFIGEG 760
               F   +GSE  + F+G G
Sbjct: 419 AGVPFFYRAGSEFEEMFVGVG 439


>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
           zinc dependent protease [Arabidopsis thaliana]
           GI:7650138; contains Pfam profile PF00004: ATPase AAA
           family
          Length = 855

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 34/84 (40%), Positives = 53/84 (63%)
 Frame = +2

Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
           E    T++   G +   +E++E++ + +K+ E F   GI  PKGVLL+GPPGTGKTLLA+
Sbjct: 309 EKTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAK 367

Query: 683 AVAHHTECTFIRVSGSELVQKFIG 754
           A+A      F   +G++ V+ F+G
Sbjct: 368 AIAGEAGLPFFAANGTDFVEMFVG 391


>At3g02450.1 68416.m00232 cell division protein ftsH, putative
           similar to SWISS-PROT:P46469 cell division protein ftsH
           homolog [Lactococcus lactis]; contains Pfam domain,
           PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
           diverse cellular 'A'ctivities)
          Length = 622

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
 Frame = +2

Query: 464 QQSRSSCVAHDGR-ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVL 640
           Q S S+  A   R ++P   ++ V G+D    E+ E++   ++    +  LG   P+GVL
Sbjct: 313 QLSASNSPAKKRRSKNPTVGFDDVEGVDSAKDELVEIVSC-LQGSINYKKLGARLPRGVL 371

Query: 641 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEG 760
           L GPPGTGKTLLARAVA      F  VS SE V+ F+G G
Sbjct: 372 LVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRG 411


>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
            identical to peroxisome biogenesis protein PEX1
            [Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
            Pfam profile PF00004: ATPase, AAA family; identical to
            cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
            partial cds GI:12006271
          Length = 1130

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 36/82 (43%), Positives = 46/82 (56%)
 Frame = +2

Query: 521  YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 700
            +E VGG+      IKE+IELP K P++F    +     VLLYGPPG GKT +  A A   
Sbjct: 843  WEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902

Query: 701  ECTFIRVSGSELVQKFIGEGRE 766
               FI V G EL+ K+IG   +
Sbjct: 903  SLRFISVKGPELLNKYIGASEQ 924



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 18/34 (52%), Positives = 23/34 (67%)
 Frame = +2

Query: 602 FDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 703
           F    I  P  +L+YGPPG+GKT+LARA A + E
Sbjct: 585 FSKFKIPSPGHILIYGPPGSGKTILARAAAKYFE 618


>At3g16290.1 68416.m02056 FtsH protease, putative contains
           similarity to cell division protein FtsH GI:1652085 from
           [Synechocystis sp. PCC 6803]
          Length = 876

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 33/83 (39%), Positives = 49/83 (59%)
 Frame = +2

Query: 512 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 691
           D  +  V GL K   E++E+++    H E++   G+  P G+LL GPPG GKTLLA+AVA
Sbjct: 406 DVKFTDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVKIPGGILLCGPPGVGKTLLAKAVA 464

Query: 692 HHTECTFIRVSGSELVQKFIGEG 760
                 F  +S S+ V+ ++G G
Sbjct: 465 GEAGVNFFSISASQFVEIYVGVG 487


>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
           PROSITE domains, PS00674: AAA-protein family signature
           and PS00017: ATP/GTP-binding site motif A (P-loop)
          Length = 1954

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 30/84 (35%), Positives = 53/84 (63%), Gaps = 5/84 (5%)
 Frame = +2

Query: 521 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV---- 688
           ++ V GL+   + +KEV+ +P+ +PE FD LG+  P+G+LL+G PGTGKTL+ RA+    
Sbjct: 718 WDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPRGILLHGHPGTGKTLVVRALIGSL 777

Query: 689 -AHHTECTFIRVSGSELVQKFIGE 757
              +    +    G++ + K++G+
Sbjct: 778 ARGNRRIAYFARKGADCLGKYVGD 801


>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 1025

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +2

Query: 518 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 694
           T++ +G L+     +KE++ LP + PELF    + +P  G+LL+GP GTGKT+LA+AVA 
Sbjct: 733 TFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILLFGPSGTGKTMLAKAVAT 792

Query: 695 HTECTFIRVSGS 730
                 I +S S
Sbjct: 793 EAGANLINMSMS 804


>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
           SP|P18708 Vesicular-fusion protein NSF
           (N-ethylmaleimide-sensitive fusion protein)
           (NEM-sensitive fusion protein) {Cricetulus griseus};
           contains Pfam profiles PF00004: ATPase AAA family,
           PF02359: Cell division protein 48 (CDC48) N-terminal
           domain; contains non-consensus AT-AC splice sites at
           intron 2
          Length = 742

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
 Frame = +2

Query: 530 VGGLDKQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 706
           +GGL  +  +I +      V  P +   LGI   KG+LL+GPPGTGKTL+AR +      
Sbjct: 217 IGGLGAEFADIFRRAFASRVFPPHVTSRLGIKHVKGMLLFGPPGTGKTLMARQIGKMLNG 276

Query: 707 TFIR-VSGSELVQKFIGE 757
              + V+G E++ KF+GE
Sbjct: 277 KDPKIVNGPEVLSKFVGE 294



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 638 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 733
           LL GP G+GKT LA  +   ++  ++++  +E
Sbjct: 534 LLEGPSGSGKTALAATIGIDSDFPYVKIVSAE 565


>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 609

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
 Frame = +2

Query: 497 GRESPDS-TYEMVGGLDKQIKEIKEVIELPVKHPELFDAL--GIA------QPKGVLLYG 649
           G +S D  +++ + G D+Q +EI++ I + +  PE++D +  G        +P+ VL  G
Sbjct: 309 GDDSMDEISWDNIAGYDQQKREIEDTILMALHSPEVYDDIVRGTRSKFESNRPRAVLFEG 368

Query: 650 PPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGE 757
           PPGTGKT  AR +A+      + V    ++ K+ GE
Sbjct: 369 PPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGE 404


>At3g04340.1 68416.m00459 FtsH protease family protein similar to
           chloroplast FtsH protease [Arabidopsis thaliana]
           GI:1483215; contains Pfam profiles PF01434: Peptidase
           family M41, PF00004: ATPase AAA family
          Length = 960

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 25/78 (32%), Positives = 41/78 (52%)
 Frame = +2

Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
           ++P    +    ++   +EI EV+   +++P+ F  +G   P+GVL+ G  GTGKT LA 
Sbjct: 417 KNPPIPLKNFASIESMREEINEVVAF-LQNPKAFQEMGARAPRGVLIVGERGTGKTSLAL 475

Query: 683 AVAHHTECTFIRVSGSEL 736
           A+A       + V   EL
Sbjct: 476 AIAAEARVPVVNVEAQEL 493


>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 500

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 28/94 (29%), Positives = 50/94 (53%)
 Frame = +2

Query: 422 RSSQRKLYLTQNTTQQSRSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPEL 601
           ++ +RKLY          +S  +H   E P +T++ +   + + +EIK  +    K  + 
Sbjct: 173 KNRERKLYSNTPGQSHGNNSKWSHVTFEHP-ATFDTLAMEENKKEEIKSDLIKFSKSKDY 231

Query: 602 FDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 703
           +  +G A  +G LL+GPPGTGK+ +  A+A+  E
Sbjct: 232 YKKIGKAWKRGYLLFGPPGTGKSTMIAAMANFLE 265


>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 341

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 22/61 (36%), Positives = 38/61 (62%)
 Frame = +2

Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
           ST+E +   D   +++ E ++  ++  E +  +G A  +G LLYGPPGTGK+ L  A+A+
Sbjct: 216 STFETMAMEDDLKRDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 275

Query: 695 H 697
           +
Sbjct: 276 Y 276


>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 505

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 22/61 (36%), Positives = 38/61 (62%)
 Frame = +2

Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
           ST+E +   D   +++ E ++  ++  E +  +G A  +G LLYGPPGTGK+ L  A+A+
Sbjct: 216 STFETMAMEDDLKRDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 275

Query: 695 H 697
           +
Sbjct: 276 Y 276


>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 576

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = +2

Query: 515 STYEMVGGLDKQIK-EIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 691
           ST++ +  +D  +K  + E ++  VK  + +  +G A  +G LLYGPPGTGK+ L  A+A
Sbjct: 262 STFKTLA-MDSDVKTSVMEDLDKFVKRRDFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMA 320

Query: 692 HH 697
           +H
Sbjct: 321 NH 322


>At1g79560.1 68414.m09275 FtsH protease, putative contains
           similarity to chloroplast FtsH protease GI:5804782 from
           [Nicotiana tabacum]
          Length = 1008

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 28/80 (35%), Positives = 45/80 (56%)
 Frame = +2

Query: 494 DGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 673
           D  E+     E+V G D  + ++ + + + + +P  +    +A  +GVLL GPPGTGKTL
Sbjct: 484 DVSETKSMYKEVVLGGD--VWDLLDELMIYMGNPMQYYEKDVAFVRGVLLSGPPGTGKTL 541

Query: 674 LARAVAHHTECTFIRVSGSE 733
            AR +A  +   F+  SG+E
Sbjct: 542 FARTLAKESGLPFVFASGAE 561


>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 451

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = +2

Query: 515 STYEMVGGLDKQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 691
           ST+  +  LD ++K+ + E ++  V+    +  +G A  +G LLYGPPGTGK+ L  A+A
Sbjct: 210 STFRTLA-LDPEVKKNLVEDLDRFVQRKGFYGRVGKAWKRGYLLYGPPGTGKSSLIAAIA 268

Query: 692 HH 697
           +H
Sbjct: 269 NH 270


>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 495

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 23/61 (37%), Positives = 37/61 (60%)
 Frame = +2

Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
           ST++ +       K+I + +E  +K  E +  +G A  +G LLYGPPGTGK+ L  A+A+
Sbjct: 206 STFDTLAMDPNAKKKIIDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 265

Query: 695 H 697
           +
Sbjct: 266 Y 266


>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 494

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 24/61 (39%), Positives = 37/61 (60%)
 Frame = +2

Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
           ST+E +       K+I + +E  +K  E +  +G A  +G LLYGPPGTGK+ L  A+A+
Sbjct: 207 STFETLAMDPGAKKKIIDDMERFLKRREFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 266

Query: 695 H 697
           +
Sbjct: 267 Y 267


>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 475

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/37 (48%), Positives = 26/37 (70%)
 Frame = +2

Query: 587 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 697
           K  + F ++G A  +G LLYGPPGTGK+ +  A+A+H
Sbjct: 226 KGKDFFKSVGRAWKRGYLLYGPPGTGKSSMVAAIANH 262


>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
           Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
           EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
           contains Pfam profile: ATPase family PF00004
           gene_id:K17E7.100 contains Pfam profile: ATPase family
           PF00004
          Length = 533

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/61 (34%), Positives = 36/61 (59%)
 Frame = +2

Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
           ST++ +   D   + + E ++  V   + +  +G A  +G LLYGPPGTGK+ L  A+A+
Sbjct: 208 STFDTMAMNDDLKRSMIEDLDRFVGRKDFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 267

Query: 695 H 697
           +
Sbjct: 268 Y 268


>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 475

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
 Frame = +2

Query: 413 LSCRSSQRKLYLTQNTTQ--QSRSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPV 586
           +  +S Q KL+    ++    S+ S   +   E P S + +     K+ +EI   +    
Sbjct: 164 IQAKSKQMKLFTNNPSSHWGTSKKSFWRYIDFEHPASFHTLAMDTKKK-EEILNDLAAFS 222

Query: 587 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 697
              E +  +G A  +G LL+GPPGTGK+ +  A+A+H
Sbjct: 223 NGKEYYKKIGKAWKRGYLLHGPPGTGKSTMIAAMANH 259


>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 514

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
 Frame = +2

Query: 413 LSCRSSQRKLYLTQNTTQQS--RSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPV 586
           +  ++ +RKLY    +   S  + +  +H   E P +T++ +    K+ +EIK  +    
Sbjct: 171 IEVKNRERKLYSNNPSQNWSGYKQTKWSHVTFEHP-ATFDTLAMEYKKKEEIKNDLIKFS 229

Query: 587 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 703
              + +  +G A  +G LL+GPPGTGK+ +  A+A+  E
Sbjct: 230 NSKDYYKKIGKAWKRGYLLFGPPGTGKSTMIAAMANLLE 268


>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 470

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 18/61 (29%), Positives = 36/61 (59%)
 Frame = +2

Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
           ST++ +   ++  + +   ++  ++  + +  +G    +G LLYGPPGTGKT L  A+A+
Sbjct: 208 STFDTMAMNEELKRSVMGDLDRFIRRKDFYKRVGKPWKRGYLLYGPPGTGKTSLVAAIAN 267

Query: 695 H 697
           +
Sbjct: 268 Y 268


>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 512

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 27/92 (29%), Positives = 41/92 (44%)
 Frame = +2

Query: 422 RSSQRKLYLTQNTTQQSRSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPEL 601
           R+ +R LY           S      R    ST++ +    ++ K I E +         
Sbjct: 170 RNEERLLYTNSRGVSLDARSHPWDSVRFKHPSTFDTLAMDPEKKKRIMEDLREFANGQGF 229

Query: 602 FDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 697
           +   G A  +G LLYGPPGTGK+ L  A+A++
Sbjct: 230 YQKTGRAWKRGYLLYGPPGTGKSSLIAAMANY 261


>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 451

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 21/64 (32%), Positives = 37/64 (57%)
 Frame = +2

Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
           E P +   +   +DK+ +  ++++       E +D +G A  +G LLYGPPGTGK+ +  
Sbjct: 196 EHPATFDTLAMDIDKKDEIFRDLVAFR-DGKEYYDRIGKAWKRGYLLYGPPGTGKSTMIA 254

Query: 683 AVAH 694
           A+A+
Sbjct: 255 AMAN 258


>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 392

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = +2

Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
           ST+  +    K    + E ++  +K  + +  +G A  +   LYGPPGTGK+ L  A+A+
Sbjct: 183 STFHTMAMTPKLKSSVMEDLDRFIKRKDYYKRVGKAWKRSYFLYGPPGTGKSSLVAAMAN 242

Query: 695 H 697
           +
Sbjct: 243 Y 243


>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 510

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
 Frame = +2

Query: 410 QLSCRSSQRKLYLTQNTTQQS--RSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELP 583
           ++  ++ +RKLY   ++   S  R    ++   + P +   +   L+K+    K++I+  
Sbjct: 166 EIGLKNRERKLYTNNSSQDYSAWREGRWSNVPFDHPATFETLAMDLEKKEGMKKDLIKF- 224

Query: 584 VKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 703
            K  + +  +G    +G LL+GPPGTGK+ +  A+A+  E
Sbjct: 225 TKGKDYYRKVGKPWKRGYLLFGPPGTGKSTMISAMANFLE 264


>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 478

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 27/100 (27%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
 Frame = +2

Query: 410 QLSCRSSQRKLYLTQNTTQQSRS-SCVAHDGRESPDSTYEMVG-GLDKQIKEIKEVIELP 583
           +++ ++ +RKLY   +++  S     +  +   +  +++E +G  LDK+ +EIK+ +   
Sbjct: 155 EIALKNRERKLYTNNDSSSYSSWWEGLWSNVPFNHHASFETLGMDLDKK-EEIKKDLIKF 213

Query: 584 VKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 703
            K  + +  +     +G LL+GPPGTGK+ +  A+A+  E
Sbjct: 214 TKGKDYYRKVAKPWKRGYLLFGPPGTGKSTMISAIANFLE 253


>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
           similarity to mitochondrial ATPase (AAA family) Bcs1p,
           Saccharomyces cerevisiae, Swiss Prot:P32839
          Length = 248

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = +2

Query: 596 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
           + F  +G A  +G LLYGPPGTGK+ L  A+A+
Sbjct: 21  DFFKTVGRAWKRGYLLYGPPGTGKSSLVAAIAN 53


>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 530

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
 Frame = +2

Query: 431 QRKLYLTQNTTQQS---RSSCVAHDGRESPDSTYEMVGGLDKQIKE-IKEVIELPVKHPE 598
           +RKLY T N++Q+    RS   ++     P +T+E +  +D + KE IK+ +    K  +
Sbjct: 177 ERKLY-TNNSSQEWYPWRSGKWSNVPFHHP-ATFETLA-MDPEKKEGIKKDLIKFSKGKD 233

Query: 599 LFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
            +  +G    +G LL+GPPGTGK+ +  A+A+
Sbjct: 234 YYKKVGKPWKRGYLLFGPPGTGKSTMIAAIAN 265


>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 473

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
 Frame = +2

Query: 413 LSCRSSQRKLYLTQNTTQ--QSRSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPV 586
           +  ++ + KL+    ++    S++S   +   E P +T+E +    K+ ++I   +    
Sbjct: 164 IDAKNKKMKLFTNNPSSHWGSSKTSFWRYIDFEHP-ATFETLAMDPKKKEQILNDLAAFN 222

Query: 587 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
              + +  +G A  +G LLYGPPGTGK+ +  A+A+
Sbjct: 223 NGKDYYKKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 258


>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
           Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
           (Replication factor C 37 kDa subunit, A1 37 kDa subunit,
           RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 339

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = +2

Query: 554 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
           K++K+V         L + L  A    +L YGPPGTGKT  A A+AH
Sbjct: 18  KQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAH 64


>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 520

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 19/61 (31%), Positives = 36/61 (59%)
 Frame = +2

Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
           ST+E +    ++ ++I + ++   +    +   G A  +G LLYGPPGTGK+ +  A+A+
Sbjct: 200 STFETLAMDPRKKQQIMDDLKDFAEGQVFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMAN 259

Query: 695 H 697
           +
Sbjct: 260 Y 260


>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
           nuclear gene encoding mitochondrial protein - Homo
           sapiens, EMBL:AF026849 contains Pfam profile: ATPase
           family PF00004
          Length = 470

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +2

Query: 596 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
           E +  +G A  +G LLYGPPGTGK+ +  A+A+
Sbjct: 231 EYYKKIGKAWKRGYLLYGPPGTGKSTMISAMAN 263


>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 644

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +2

Query: 629 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 736
           + +L YGPPGTGKT+ AR +A  +   +  ++G ++
Sbjct: 399 RNILFYGPPGTGKTMAARELARRSGLDYALMTGGDV 434


>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 620

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +2

Query: 629 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 736
           + ++ YGPPGTGKT++AR +A  +   +  ++G ++
Sbjct: 371 RNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 406


>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family associated with
           various cellular activities (AAA)
          Length = 636

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +2

Query: 629 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 736
           + ++ YGPPGTGKT++AR +A  +   +  ++G ++
Sbjct: 386 RNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 421


>At1g08270.2 68414.m00912 expressed protein low similarity to
           SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
           {Mus musculus}
          Length = 132

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 500 RESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGV 637
           RE P+  + +V GL+   + +KE + LPV  P+ F A  I  P+ V
Sbjct: 85  REKPNVKWTVVAGLESAKQALKEAVILPVNFPQFFTARAIYDPRDV 130


>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 506

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 19/61 (31%), Positives = 36/61 (59%)
 Frame = +2

Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
           ST++ +     + ++I E ++   +    ++  G A  +G LLYGPPGTGK+ +  A+A+
Sbjct: 200 STFDTLAMDPVKKQQIMEDLKDFAECQSFYERTGRAWKRGYLLYGPPGTGKSSMIAAMAN 259

Query: 695 H 697
           +
Sbjct: 260 Y 260


>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
           subunit ClpX1 (CLPX) identical to CLP protease
           regulatory subunit CLPX GI:2674203 from [Arabidopsis
           thaliana]
          Length = 579

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 623 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-FIGEGRE 766
           +   +LL GP G+GKTLLA+ +A      F+    + L Q  ++GE  E
Sbjct: 222 EKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVE 270


>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
           ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 639

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 14/36 (38%), Positives = 25/36 (69%)
 Frame = +2

Query: 629 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 736
           + +LL+GPPGTGKT+ AR +A  +   +  ++G ++
Sbjct: 398 RNILLHGPPGTGKTMAARELARKSGLDYALMTGGDV 433


>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
           subunit ClpX, putative similar to CLP protease
           regulatory subunit CLPX GI:2674203 from [Arabidopsis
           thaliana]; non-consensus splice donor GC at exon 4;
           non-consensus splice donor AA at exon 7
          Length = 606

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 635 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-FIGEGRE 766
           VLL GP G+GKTLLA+ +A      F     + L Q  ++GE  E
Sbjct: 265 VLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQAGYVGEDVE 309


>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
           protease homolog 2 SP:P93655
          Length = 924

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 614 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 724
           G +Q K + L GPPG GKT + R++A   +  F R S
Sbjct: 436 GTSQGKIICLSGPPGVGKTSIGRSIARALDRKFFRFS 472


>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 491

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = +2

Query: 557 EIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 736
           ++K  +E  +K  + ++ LG    +  LLYGP GTGK+    A+A+  +     +  S++
Sbjct: 208 KVKSDLESFLKGKQYYNRLGRVWKRSYLLYGPSGTGKSSFVAAMANFLDYDVYDIDLSKV 267

Query: 737 V 739
           V
Sbjct: 268 V 268


>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
           subunit ClpX, putative similar to CLP protease
           regulatory subunit CLPX GI:2674203 from [Arabidopsis
           thaliana]
          Length = 656

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 635 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-FIGEGRE 766
           VLL GP G+GKTLLA+ +A      F+    + L Q  ++G+  E
Sbjct: 311 VLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVE 355


>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
           Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
           (Replication factor C 37 kDa subunit, A1 37 kDa subunit,
           RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 327

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 635 VLLYGPPGTGKTLLARAVAH 694
           +L YGPPGTGKT  A A+AH
Sbjct: 33  MLFYGPPGTGKTTTALAIAH 52


>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
           HPV16 E1 protein binding protein [Homo sapiens]
           gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
           ATPase, AAA family ('A'TPases 'A'ssociated with diverse
           cellular 'A'ctivities)
          Length = 467

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
 Frame = +2

Query: 635 VLLYGPPGTGKTLLARAVA---------HHTECTFIRVSGSELVQKFIGE 757
           +LL+GPPGTGKT L +A+A          +  C  I V+   L  K+  E
Sbjct: 205 ILLHGPPGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHSLFSKWFSE 254


>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
           almost identical to Lon protease homolog 2
           mitochondrial precursor SP:P93655, GI:1848290 from
           [Arabidopsis thaliana]
          Length = 940

 Score = 34.7 bits (76), Expect = 0.068
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 614 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 724
           G +Q K + L GPPG GKT + R++A      F R S
Sbjct: 453 GTSQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFS 489


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
           to pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, ABC1 protein [Nicotiana
           plumbaginifolia] GI:14331118; contains Pfam profile
           PF00005: ABC transporter
          Length = 1406

 Score = 34.3 bits (75), Expect = 0.090
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +2

Query: 599 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 727
           L D  GI +P +  LL GPPG+GK+ L +A++  TE T +R +G
Sbjct: 162 LNDVSGIIKPGRLTLLLGPPGSGKSTLLKALSGKTE-TGLRSTG 204


>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1218

 Score = 34.3 bits (75), Expect = 0.090
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
 Frame = +2

Query: 404 HGQLSCRSSQRKLYLTQNTTQQSRSS--CVAHDGRESPDSTYEMVGGLDKQIKEI--KEV 571
           +G+L   +  R      +T+ +S+     VA DG E   ST E +    ++ + +  +E+
Sbjct: 404 YGELDLEAQSRLDGRRWSTSYRSQDGLEAVALDGEEEEGSTPETIRSFSQKYRPMFFEEL 463

Query: 572 IELPVKHPELFDALGIAQPKGVLLY-GPPGTGKTLLARAVAHHTEC 706
           I   +    L +A+  ++   V L+ GP GTGKT  AR  +    C
Sbjct: 464 IGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNC 509


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
           (MIDAS-containing protein) (Swiss-Prot:Q12019)
           [Saccharomyces cerevisiae]; similar to Midasin
           (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
           sapiens]; contains Prosite PS00017: ATP/GTP-binding site
           motif A (P-loop)
          Length = 5336

 Score = 34.3 bits (75), Expect = 0.090
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +2

Query: 551 IKEIKEVIELPVKHPELFD--ALGIAQPKGVLLYGPPGTGKTLLARAVA 691
           +    E  E+  +  + F+  +L ++Q + VLLYGP G+GK+ L R +A
Sbjct: 326 VNSFSEPFEIHSRVKKSFEMVSLAVSQKRPVLLYGPSGSGKSALIRKLA 374



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +2

Query: 473  RSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQ-PKGVLLYG 649
            +S  V H+G    D  +   G  + +I   + +   P  H  +   L   Q  K +LL G
Sbjct: 1695 KSKSVRHEGMFGIDPFFISKGDENPEIGGFEFLA--PTTHRNVLRVLRAMQLSKPILLEG 1752

Query: 650  PPGTGKTLLARAVAHHTECTFIRVSGSE 733
             PG GKT L  A+  ++    +R++ SE
Sbjct: 1753 SPGVGKTSLILALGKYSGHKVVRINLSE 1780



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +2

Query: 635  VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL--VQKFIG 754
            VLL GP  +GKT L + +A  +   F+R++  E   +Q+++G
Sbjct: 1075 VLLQGPTSSGKTSLVKYLAAISGNKFVRINNHEQTDIQEYLG 1116


>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
           putative similar to heat shock protein 101 GI:6715468
           GB:AAF26423 from [Arabidopsis thaliana]
          Length = 623

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
 Frame = +2

Query: 512 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIA---QPKGVLLY-GPPGTGKTLLA 679
           D  +E V G D+ +K +   I        L   +G+    QP G  L+ GP G GKT LA
Sbjct: 530 DKLHERVVGQDEAVKAVAAAI--------LRSRVGLGRPQQPSGSFLFLGPTGVGKTELA 581

Query: 680 RAVAHH---TECTFIRVSGSELVQKF 748
           +A+A     +E   +R+  SE   KF
Sbjct: 582 KALAEQLFDSENLLVRLDMSEYNDKF 607


>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
           protein-related similar to TATA box-binding
           protein-interacting protein SP:O35753 from [ Mus
           musculus]
          Length = 458

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +2

Query: 629 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 736
           K +LL GPPGTGKT LA  ++    ++  F  + GSE+
Sbjct: 67  KALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEV 104


>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1226

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +2

Query: 536 GLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 715
           GL ++++E+KE ++L  +   +   LG+         G PG GKT LAR +     C F+
Sbjct: 211 GLKQRLEELKEKLDLDCEETRI---LGVV--------GMPGIGKTTLAREIYETLRCKFL 259

Query: 716 R 718
           R
Sbjct: 260 R 260


>At2g36380.1 68415.m04464 ABC transporter family protein related to
           multi drug resistance proteins and P-glycoproteins
          Length = 1453

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +2

Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGV-LLYGPPGTGKTLLARAVA 691
           +T E + GL   +   K  IE+      L D  GI +P  + LL GPP +GKT L +A+A
Sbjct: 167 NTIESILGLFHLLPSKKRKIEI------LKDISGIIKPSRMTLLLGPPSSGKTTLLQALA 220

Query: 692 HHTECTFIRVSG 727
              + T +++SG
Sbjct: 221 GKLDDT-LQMSG 231


>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
           protease homolog 2 SP:P93655
          Length = 942

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 614 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 724
           G +Q K + L GP G GKT + R++A   +  F R S
Sbjct: 445 GTSQGKIICLSGPTGVGKTSIGRSIARALDRKFFRFS 481


>At2g37280.1 68415.m04573 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1413

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 599 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTE 703
           L D  GI  P +  LL GPPG GKT L +A++ + E
Sbjct: 155 LTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLE 190


>At1g08270.1 68414.m00913 expressed protein low similarity to
           SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
           {Mus musculus}
          Length = 126

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 500 RESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF 604
           RE P+  + +V GL+   + +KE + LPV  P+ F
Sbjct: 85  REKPNVKWTVVAGLESAKQALKEAVILPVNFPQFF 119


>At5g67630.1 68418.m08527 DNA helicase, putative similar to
           RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
           reptin [Drosophila melanogaster] GI:7243682
          Length = 469

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 629 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 736
           + +L+ G PGTGKT +A  +A     E  F  ++GSE+
Sbjct: 67  RAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEI 104


>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
           RNA helicase pNORF1 [Homo sapiens] GI:1885356
          Length = 1254

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 638 LLYGPPGTGKTLLARAVAHH 697
           L+ GPPGTGKT+ + A+ +H
Sbjct: 507 LIQGPPGTGKTVTSAAIVYH 526


>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
           similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
           (Replication factor C 36 kDa subunit, A1 36 kDa subunit,
           RF-C 36 kDa subunit, RFC36) [Homo sapiens]
          Length = 369

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = +2

Query: 635 VLLYGPPGTGKTLLARAVA 691
           +LLYGPPGTGKT    AVA
Sbjct: 75  LLLYGPPGTGKTSTILAVA 93


>At1g66950.1 68414.m07612 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1454

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 599 LFDALGIAQPKGV-LLYGPPGTGKTLLARAVAHHTECTFIRVSG 727
           L D  GI +P  + LL GPP +GKT L +A+A   + T +++SG
Sbjct: 191 LKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDT-LQMSG 233


>At1g15520.1 68414.m01867 ABC transporter family protein similar to
           ABC1 protein GI:14331118 from [Nicotiana
           plumbaginifolia]
          Length = 1423

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 497 GRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTL 673
           GR  P     +    DK +  +  V     K   L D  GI +P +  LL GPP +GKT 
Sbjct: 136 GRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTT 195

Query: 674 LARAVA 691
           L  A+A
Sbjct: 196 LLLALA 201


>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
           putative / heat shock protein clpB, putative /
           HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
           [Phaseolus lunatus]
          Length = 964

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = +2

Query: 638 LLYGPPGTGKTLLARAVA---HHTECTFIRVSGSELVQK 745
           +  GP G GKT LA+A+A    +TE   +RV  SE ++K
Sbjct: 687 MFMGPTGVGKTELAKALAGYLFNTENAIVRVDMSEYMEK 725


>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
           putative / heat shock protein clpB, putative /
           HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
           [Phaseolus lunatus]
          Length = 968

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = +2

Query: 638 LLYGPPGTGKTLLARAVAHH---TECTFIRVSGSELVQK 745
           +  GP G GKT LA+A+A +   TE   +R+  SE ++K
Sbjct: 682 MFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEK 720


>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1116

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
 Frame = +2

Query: 476 SSCVAHDGR----ESPDSTYEMVGGLDKQIKEI--KEVIELPVKHPELFDALGIAQPKGV 637
           S C + DG     E   ST E +  L ++ K +   E+I   +    L +A+   +   V
Sbjct: 399 SCCKSQDGEREEEEEGGSTPESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHV 458

Query: 638 LLY-GPPGTGKTLLARAVAHHTECTFI 715
            L+ GP GTGKT  AR ++    C  +
Sbjct: 459 YLFQGPRGTGKTSTARILSAALNCDVV 485


>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 954

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 614 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 733
           G  + K +LL G PG GKT LA   A H     + ++ S+
Sbjct: 341 GPPEQKILLLCGAPGLGKTTLAHIAAKHCGYRVVEINASD 380


>At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1109

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/61 (31%), Positives = 36/61 (59%)
 Frame = +2

Query: 506 SPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 685
           +P S ++ + G++  +KE++ +++        FD  G+   K V ++GP G GKT +ARA
Sbjct: 177 TPSSDFDGMVGIEAHLKEMEVLLD--------FDYDGV---KIVGIFGPAGIGKTTIARA 225

Query: 686 V 688
           +
Sbjct: 226 L 226


>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
           to heat shock protein 101 GI:6715468 GB:AAF26423 from
           [Arabidopsis thaliana]
          Length = 911

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = +2

Query: 623 QPKGVLLY-GPPGTGKTLLARAVAHH---TECTFIRVSGSELVQK 745
           QP G  L+ GP G GKT LA+A+A      E   +R+  SE +++
Sbjct: 597 QPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQ 641


>At4g15215.1 68417.m02332 ABC transporter family protein similar to
           PDR5-like ABC transporter [Spirodela polyrhiza]
           GI:1514643; contains Pfam profile PF00005: ABC
           transporter
          Length = 1390

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 476 SSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGP 652
           + C    G+  P     + G L K +   KE      K   L    GI +P +  LL GP
Sbjct: 118 AECQVVHGKPIPTLWNTIKGSLSKFVCSKKET-----KIGILKGVSGIVRPGRMTLLLGP 172

Query: 653 PGTGKTLLARAVA 691
           PG GKT L +A++
Sbjct: 173 PGCGKTTLLQALS 185


>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
           helicase GI:4521249 from [Mus musculus]
          Length = 473

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 629 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 736
           + +L+ G PGTGK  +A  +A     E  F  ++GSE+
Sbjct: 67  RAILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEI 104


>At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1131

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/68 (29%), Positives = 36/68 (52%)
 Frame = +2

Query: 485 VAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTG 664
           V++    +P   +E + GL+  +K+I+ ++ L  K   L   +GI+        GP G G
Sbjct: 176 VSYKLNATPSKDFEDMMGLEAHLKKIQSLLRLDYKDEALI--IGIS--------GPAGIG 225

Query: 665 KTLLARAV 688
           K+ +ARA+
Sbjct: 226 KSTIARAL 233


>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1127

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +2

Query: 506 SPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 685
           SP + +E + G++  I ++  ++ L  +   +           V ++GP G GKT +ARA
Sbjct: 179 SPSNDFEDLVGIEDHITKMSSLLHLESEEVRM-----------VGIWGPSGIGKTTIARA 227

Query: 686 VAHHTECTF 712
           +     C F
Sbjct: 228 LFSRLSCQF 236


>At4g15236.1 68417.m02335 ABC transporter family protein similar to
           pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, ABC1 protein [Nicotiana
           plumbaginifolia] GI:14331118; contains Pfam profile
           PF00005: ABC transporter
          Length = 1388

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 614 GIAQPKGV-LLYGPPGTGKTLLARAVA 691
           GI +PK + LL GPPG GKT L  A++
Sbjct: 157 GIIRPKRMTLLLGPPGCGKTTLLLALS 183


>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
           profile: ATPase family PF00004
          Length = 440

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +2

Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
           S++E +   +   + + + I+L +   + +  +G    +  LL+G PG GKT L  A+A 
Sbjct: 162 SSFETIVMKEDLKRRLIDDIDLFISKEDFYKRVGRHWMRYYLLHGLPGAGKTSLVAAIAK 221

Query: 695 H 697
           +
Sbjct: 222 Y 222


>At2g29940.1 68415.m03642 ABC transporter family protein similar to
           ABC1 protein GI:14331118 from [Nicotiana
           plumbaginifolia]
          Length = 1426

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 599 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVA 691
           L D  GI +P +  LL GPPG+GK+ L  A+A
Sbjct: 176 LKDISGIIKPGRMTLLLGPPGSGKSTLLLALA 207


>At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1195

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/70 (30%), Positives = 35/70 (50%)
 Frame = +2

Query: 509 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 688
           P++  E+VG L +++KE+KE ++L  K   +   LG+           PG GKT L + +
Sbjct: 214 PENQIELVG-LSQRLKELKEKLDLSRKETRIVGVLGM-----------PGIGKTTLVKRL 261

Query: 689 AHHTECTFIR 718
               +  F R
Sbjct: 262 YDEWKHNFQR 271


>At1g60700.1 68414.m06833 forkhead-associated domain-containing
           protein / FHA domain-containing protein contains
           similarity to nucleolar protein GI:2384719 from [Mus
           musculus]
          Length = 525

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 372 DLDKNVDINDVTANCRVALRNES-YTLHKILPNKVDPL 482
           DLD N DI D   + R  LR ES +    ++ N  DPL
Sbjct: 64  DLDNNADIGDGDEDIRNCLRPESDFWFKNLMDNPYDPL 101


>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
           gb|Z70524 GI:1514643 PDR5-like ABC transporter from
           Spirodela polyrrhiza and is a member of the PF|00005 ABC
           transporter family. ESTs gb|N97039 and gb|T43169 come
           from this gene
          Length = 1442

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 599 LFDALGIAQPKGV-LLYGPPGTGKTLLARAVA 691
           L D  GI +P  + LL GPP +GKT L  A+A
Sbjct: 185 LKDVSGIVKPSRMTLLLGPPSSGKTTLLLALA 216


>At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|P28290 Sperm-specific
           antigen 2 (Cleavage signal-1 protein) (CS-1) Homo
           sapiens; contains Pfam profile PF00515: TPR Domain
          Length = 649

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +2

Query: 464 QQSRSSCVAHDGRESPDSTYEMVGG-LDKQIKEIKEVIELPVKHPELFDALGIAQPKGVL 640
           Q     C+  DG    DS  E+ G  L++ + ++K+ I+L V+   +++ LG+   K   
Sbjct: 187 QIHHGQCLLLDGFGDTDSVKELEGEELEEILSKLKDSIKLDVRQAAVWNTLGLMLLKAGC 246

Query: 641 LYGPPGTGKTLLA 679
           L        +LLA
Sbjct: 247 LMSAISVLSSLLA 259


>At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial
           (LON) identical to Lon protease homolog 1  mitochondrial
           precursor SP:O64948 from [Arabidopsis thaliana]
          Length = 888

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 647 GPPGTGKTLLARAVAHHTECTFIRVS 724
           GPPG GKT LA ++A      F+R+S
Sbjct: 408 GPPGVGKTSLASSIAAALGRKFVRLS 433


>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 818

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 611 LGIAQPKGVLLYGPPGTGKT 670
           +G+++   VL+ GPPGTGKT
Sbjct: 268 VGLSRKSFVLIQGPPGTGKT 287


>At4g15230.1 68417.m02333 ABC transporter family protein similar to
           pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, PDR5-like ABC transporter
           [Spirodela polyrhiza] GI:1514643; contains Pfam profile
           PF00005: ABC transporter
          Length = 1326

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 614 GIAQP-KGVLLYGPPGTGKTLLARAVA 691
           GI +P +  LL GPPG GKT L +A++
Sbjct: 162 GIVRPGRMTLLLGPPGCGKTTLLQALS 188


>At3g16340.1 68416.m02066 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1416

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 599 LFDALGIAQPKGV-LLYGPPGTGKTLLARAVA 691
           L D  GI +P  + LL GPP +GKT L  A+A
Sbjct: 163 LRDVSGIIKPSRMTLLLGPPSSGKTTLLLALA 194


>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
           similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
           (Replication factor C 40 kDa subunit, A1 40 kDa subunit,
           RF-C 40 kDa subunit, RFC40) [Mus musculus]
          Length = 333

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 635 VLLYGPPGTGKTLLARAVAH 694
           ++L GPPGTGKT    A+AH
Sbjct: 51  LILSGPPGTGKTTSILALAH 70


>At1g59870.1 68414.m06745 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1469

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 599 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 727
           L D  G+ +P +  LL GPP +GKT L  A+A   + + ++VSG
Sbjct: 187 LKDISGVIKPGRMTLLLGPPSSGKTTLLLALAGKLDKS-LQVSG 229


>At4g30490.1 68417.m04329 AFG1-like ATPase family protein contains
           Pfam profile: PF03969 AFG1-like ATPase
          Length = 497

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 629 KGVLLYGPPGTGKTLLARAVAHHTECTF 712
           KG+ LYG  GTGKT+L         CT+
Sbjct: 162 KGLYLYGGVGTGKTMLMDLFFDQLPCTW 189


>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
           ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
          Length = 1450

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 605 DALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTE 703
           D  GI +P +  LL GPP  GKT L +A++ + E
Sbjct: 192 DVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLE 225


>At1g73170.1 68414.m08466 expressed protein
          Length = 666

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 635 VLLYGPPGTGKTLLARAVA 691
           +LL GPPG GKT + R VA
Sbjct: 200 LLLIGPPGVGKTTMIREVA 218


>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
           Werner helicase interacting protein [Homo sapiens]
           GI:14349166; contains Pfam profiles PF00004: ATPase
           family associated with various cellular activities
           (AAA), PF00627: UBA/TS-N domain; contains
           ATP/GTP-binding site motif A (P-loop)
          Length = 525

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 9/23 (39%), Positives = 19/23 (82%)
 Frame = +2

Query: 635 VLLYGPPGTGKTLLARAVAHHTE 703
           ++ +GPPGTGKT +A+++ + ++
Sbjct: 140 IVFWGPPGTGKTSIAKSLINSSK 162


>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
           resistance protein-related low similarity to disease
           resistance protein RPP4 [Arabidopsis thaliana]
           GI:20270890; contains Pfam profiles PF00412: LIM domain,
           PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1613

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 629 KGVLLYGPPGTGKTLLARAVAHH 697
           + + ++G PG GKT LA+AV +H
Sbjct: 190 RSIGIWGMPGIGKTTLAKAVFNH 212


>At5g11710.1 68418.m01368 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related contains Pfam PF01417: ENTH domain. ENTH
           (Epsin N-terminal homology) domain; similar to
           Af10-protein (GI:1724114) [Avena fatua]; similar to
           clathrin assembly protein AP180 (GI:6492344) [Xenopus
           laevis]; Af10-protein, Avena fatua, EMBL:U80041
          Length = 560

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 542 DKQIKEIKEVIELPV-KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 718
           D+ ++EIK  + L V K PE+   +  A       +GP GT    +A+A    +EC  + 
Sbjct: 8   DQTVREIKREVNLKVLKVPEMEQKVLDATDNEP--WGPHGTALAEIAQATKKFSECQMVM 65

Query: 719 VSGSELVQKFIGEGREW 769
              S L  +    G++W
Sbjct: 66  ---SVLWTRLSETGKDW 79


>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1189

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 641 LYGPPGTGKTLLARAVAHHTECTF 712
           ++GPPG GKT +AR V +    +F
Sbjct: 262 IWGPPGIGKTTIARVVYNQLSHSF 285


>At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyrin
           repeat family protein contains Pfam profiles: PF00023
           ankyrin repeat, PF00004 ATPase family associated with
           various cellular activities (AAA)
          Length = 481

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 611 LGIAQPKGVLLYGPPGTGKTLLARAV 688
           +G  +P  +   G PGTGKT++AR +
Sbjct: 240 IGTRRPPHMAFLGNPGTGKTMVARVL 265


>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
           SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
           (Immunoglobulin MU binding protein 2, SMUBP-2)
           [Mesocricetus auratus]
          Length = 961

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 608 ALGIAQPKGVLLY-GPPGTGKTLLARAV 688
           ALG+ + + V++  GPPGTGKT + + V
Sbjct: 496 ALGVNKKRPVMIVQGPPGTGKTGMLKEV 523


>At4g26090.1 68417.m03756 disease resistance protein RPS2
           (CC-NBS-LRR class), putative domain signature CC-NBS-LRR
           exists, suggestive of a disease resistance protein.
           identical to RPS2 (gi:13661831)
          Length = 909

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 560 IKEVIELPVKHPELFDALGIAQPKGVL-LYGPPGTGKTLLARAV 688
           IK V+       ++ + L   + +G++ +YGP G GKT L +++
Sbjct: 152 IKSVVGNTTMMEQVLEFLSEEEERGIIGVYGPGGVGKTTLMQSI 195


>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 896

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 629 KGVLLYGPPGTGKTLLARAV 688
           K + ++GPPG GKT +AR++
Sbjct: 259 KTIGIWGPPGVGKTTIARSL 278


>At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1017

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/61 (29%), Positives = 34/61 (55%)
 Frame = +2

Query: 506 SPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 685
           +P   ++ + G++  ++EIK +++L        D + +   K V + GP G GKT +ARA
Sbjct: 179 TPSRDFDGMVGIEAHLREIKSLLDL--------DNVEV---KIVAIAGPAGIGKTTIARA 227

Query: 686 V 688
           +
Sbjct: 228 L 228


>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
           PF04950: Protein of unknown function (DUF663)
          Length = 1147

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 593 PELFDALGIAQPKGVLLYGPPGTGKTLLARAV 688
           P++    G A P  V++ GPPG GK+L+ +++
Sbjct: 72  PKIDRNYGEAPPFVVVVQGPPGVGKSLVIKSL 103


>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1046

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 641 LYGPPGTGKTLLARAVAHHTECTF 712
           +YGP G GKT +ARA+      +F
Sbjct: 215 IYGPAGIGKTTIARALHSRLSSSF 238


>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
           domain-containing protein contains Pfam profiles:
           PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
           family associated with various cellular activities (AAA)
          Length = 956

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 629 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 733
           K VLL G PG GKT  A+ V+       + V+ S+
Sbjct: 394 KAVLLSGTPGIGKTTSAKLVSQMLGFQAVEVNASD 428


>At4g38870.1 68417.m05504 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 426

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/98 (24%), Positives = 46/98 (46%)
 Frame = +1

Query: 175 SSLSPKNLKIFVVFKPSVMNSTLKFVCYARSFSSCKNRDRTSEKWLNQWIKRRSS*KFIL 354
           S L P +L I  + K   +   ++F+C ++ ++S        + +LN+ +KR  S  F+ 
Sbjct: 50  SELLPVDL-IMEILKKLSLKPLIRFLCVSKLWASIIRDPYFMKLFLNESLKRPKSLVFVF 108

Query: 355 KVNSSSI*TRTLILTMSRPIVVSLFATKAIPYTKYYPT 468
           +  S      ++ L  +R I  S  ++ A   T Y+ T
Sbjct: 109 RAQSLGSIFSSVHLKSTREISSSSSSSSASSIT-YHVT 145


>At4g28070.1 68417.m04026 AFG1-like ATPase family protein contains
           Pfam profile: PF03969 AFG1-like ATPase
          Length = 464

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 617 IAQPKGVLLYGPPGTGKTLLARAVAH 694
           ++  KG+ LYG  GTGKT+L     H
Sbjct: 130 VSPVKGLYLYGGVGTGKTMLMDLFFH 155


>At1g79050.1 68414.m09217 DNA repair protein recA identical to DNA
           repair protein recA, chloroplast [Precursor] SP:Q39199
           from [Arabidopsis thaliana] ;contains Pfam profile:
           PF00154 recA bacterial DNA recombination protein
          Length = 439

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +2

Query: 608 ALGIAQPKG--VLLYGPPGTGKTLLA 679
           ALG   PKG  V +YGP  +GKT LA
Sbjct: 127 ALGGGLPKGRVVEIYGPESSGKTTLA 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,722,262
Number of Sequences: 28952
Number of extensions: 314044
Number of successful extensions: 1306
Number of sequences better than 10.0: 150
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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