Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00013
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom...    28   5.4  
At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 ...    28   5.4  
At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing ...    28   5.4  
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR...    27   9.4  
At3g48380.2 68416.m05281 expressed protein                             27   9.4  
At3g48380.1 68416.m05280 expressed protein                             27   9.4  
At3g18215.1 68416.m02317 expressed protein contains Pfam profile...    27   9.4  
At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    27   9.4  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    27   9.4  
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi...    27   9.4  

>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
           domain, PF03343: SART-1 family
          Length = 820

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 271 EWRMRTL-LLEGGVPGIADDEGAEDCSNTSSGTSYSHCRCTSTNEFG 134
           EW  R +   +  + GI DD+G ++  +  S   +   R   T+EFG
Sbjct: 645 EWGGRNMDKKKSKLVGIVDDDGGKESKDKESKDRFKDIRIERTDEFG 691


>At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 /
           alpha-SNAP1 (ASNAP1) identical to alpha-soluble NSF
           attachment protein 1 (Alpha-SNAP1) (N-
           ethylmaleimide-sensitive factor attachment protein,
           alpha 1) (Swiss-Prot:Q9LXZ5) [Arabidopsis thaliana]
          Length = 381

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = -3

Query: 483 CNXHQSLHHYEG-EVSKHSIPWLSTP-DSIH*NLICRMAVVVFLKVNSLESE-EQQERHH 313
           C  H+   +YE  E+ + +I +  T  +      +   A    LKV    S+ EQQ R  
Sbjct: 167 CMDHEIAEYYESDEMFEQAIAYYETAAEFFQIEEVTTSANQCNLKVAQYASQLEQQSRFM 226

Query: 312 KTEQTHSLRQGETQNGV*EH 253
           KT+  HSL     + GV  H
Sbjct: 227 KTQARHSLNNKLLKYGVKGH 246


>At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing
           protein low similarity to cysteine-rich polycomb-like
           protein (cpp1) [Glycine max] GI:4218187; contains Pfam
           profile PF03638: Tesmin/TSO1-like CXC domain
          Length = 360

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 66  SLHSSLQCGPSRPYRSLR--TLTLLPN 140
           +L S + C P  PYRSL   T TLLP+
Sbjct: 225 ALGSPMSCSPKLPYRSLMGYTSTLLPD 251


>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1234

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 220  DDEGAEDCSNTSSGTSYS-HCRCTSTNEFGSRVNVLSD 110
            DDE ++D  + SS T YS  C  +  ++ G+ ++   D
Sbjct: 1108 DDESSDDDDDLSSETDYSDECEDSDDSDLGNEIDYSED 1145


>At3g48380.2 68416.m05281 expressed protein
          Length = 640

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 172 SWFRSWYWNSLRLPHHRLCQEPL 240
           SWFR  ++ S+ +P HR  Q+ L
Sbjct: 477 SWFRLQHYTSISVPSHREIQQTL 499


>At3g48380.1 68416.m05280 expressed protein
          Length = 645

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 172 SWFRSWYWNSLRLPHHRLCQEPL 240
           SWFR  ++ S+ +P HR  Q+ L
Sbjct: 482 SWFRLQHYTSISVPSHREIQQTL 504


>At3g18215.1 68416.m02317 expressed protein contains Pfam profile
           PF04654: Protein of unknown function, DUF599
          Length = 244

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 269 FWVSPCLRLWVCSVL*WRSCCSSLSKLFTFKNTTTAIL-HMRFQCILSGVDS 421
           F+ S  L LW    +    CC  +S +  F +TTT+   H+  Q      DS
Sbjct: 181 FYFSFPLFLWTFGPIPMFVCCCMMSSILYFLDTTTSFTRHLHSQSFRETADS 232


>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 217 HRLCQEPLPQAAVFSYAILGFALSE 291
           H + + P      F YAILGFAL+E
Sbjct: 44  HSVARNPSLAKQSFGYAILGFALTE 68


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 141  NLAAESMSLVTDMVWKDRTAESCVGTAGTICVWVGTAASGRTS 13
            N+A+E + L+ ++         CV     +C+ VG ++SG+TS
Sbjct: 2028 NIASEQLKLLPEIRQNLEAVAHCVQNKW-LCILVGPSSSGKTS 2069


>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 656

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -3

Query: 480 NXHQSLHHYEGEVSKHSIPWLSTPDSIH*NLICRMAVVVFLKVNSLESEE 331
           N   + H++E    KH++ W S   +   N   + AV +F+++N +E E+
Sbjct: 358 NVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMN-IEGEK 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,730,643
Number of Sequences: 28952
Number of extensions: 259011
Number of successful extensions: 908
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)