Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00008
         (801 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32040.1 68415.m03914 integral membrane transporter family pr...    31   1.2  
At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein ...    29   2.7  
At1g79480.1 68414.m09263 hypothetical protein low similarity to ...    29   4.7  
At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase, ...    28   6.3  

>At2g32040.1 68415.m03914 integral membrane transporter family
           protein contains 9 transmembrane domains; contains Pfam
           PF03092: BT1 family; contains TIGRFAMS TIGR00788:
           folate/biopterin transporter; similar to high affinity
           folic acid/methotrexate transporter 5 (GI:21898554)
           [Leishmania tarentolae]
          Length = 560

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 64  VEGFHCHGWIMKP*YSGLSATVPLFPHTRRS 156
           + G     W++KP Y  +S +VPLF + RRS
Sbjct: 165 ITGLSSLPWLVKPLYGFISDSVPLFGYRRRS 195


>At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain; this
           cDNA may contain an anomalously spliced intron...will
           require further examination.
          Length = 765

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = -1

Query: 534 LEPIDIHNVMRHPP*DTSSKVSCIATVTVITNKHFNFSHIT*TQHSGCTSLCYRILETRP 355
           L P D+  V R    D S+   C   V  I NK          +   C+SL   ++ TR 
Sbjct: 212 LRPSDLSFVFRLQVADNSTLYGCCLLVEEIVNKPSRLLSTVLDKQPACSSLSRYVMTTRR 271

Query: 354 C 352
           C
Sbjct: 272 C 272


>At1g79480.1 68414.m09263 hypothetical protein low similarity to
           beta-1,3-glucanase-like protein GI:9758115 from
           [Arabidopsis thaliana]
          Length = 356

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 228 SAVPH*ESGVPAGPEAGRERGPVRGPP 148
           S+ P+    VP+ PE+G   GPV GPP
Sbjct: 197 SSSPNPPEIVPSPPESGYTPGPVLGPP 223


>At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase,
           putative similar to pathogen-inducible alpha-dioxygenase
           [Nicotiana attenuata] GI:12539609; contains Pfam profile
           PF03098: Animal haem peroxidase
          Length = 631

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -1

Query: 651 SKCIFMIFMIANYKKTIIDFFFIA*MGGRAHSPSGIKWLLEPIDIHNVM-RHPP*DTSSK 475
           S+  F IF++   ++   D FF      + ++  G++W+     + +V+ RH P  T   
Sbjct: 544 SETAFFIFLLVASRRLEADRFFTTNFNEKTYTKEGLEWVNTTETLKDVIDRHFPRLTDQW 603

Query: 474 VSCIATVTV 448
           + C +  +V
Sbjct: 604 MRCSSAFSV 612


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,386,153
Number of Sequences: 28952
Number of extensions: 345679
Number of successful extensions: 696
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)