Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_B18
(656 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 33 0.22
At2g14130.1 68415.m01574 Ulp1 protease family protein contains P... 31 0.51
At5g58370.2 68418.m07309 expressed protein 30 1.2
At5g58370.1 68418.m07308 expressed protein 30 1.2
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 30 1.6
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 30 1.6
At5g34900.1 68418.m04114 Ulp1 protease family protein contains P... 29 2.7
At3g11720.1 68416.m01437 expressed protein 29 3.6
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 29 3.6
At1g19430.1 68414.m02421 dehydration-responsive protein-related ... 29 3.6
At4g08430.1 68417.m01392 Ulp1 protease family protein similar to... 28 4.8
At3g42190.1 68416.m04340 hypothetical protein 28 4.8
At3g16730.1 68416.m02136 expressed protein ; expression supporte... 28 4.8
At1g17820.1 68414.m02206 expressed protein 28 4.8
At4g00310.1 68417.m00039 expressed protein 28 6.3
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 28 6.3
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co... 27 8.3
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 436 KRERQITPSPELKKASSDEEEVISL---PTKRKRIRLNPVDSDDSDVENKADNKI 591
K +Q P P+ + ++V + PTK K IR +D+D+ D ++K+++ I
Sbjct: 8 KPSQQEEPLPQPAAQETQSQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSI 62
>At2g14130.1 68415.m01574 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At1g32840, At4g04010,
At2g06430, At2g15140, At2g04980, At3g44500, At2g15190,
At3g47260, At5g34900, At3g29210, At2g02210, At3g32900
Length = 808
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +1
Query: 370 LKIPIVMVPRKSSKKGIHLENKKRERQITPSPELKKASSDEEEVIS---LPTKRKRIRLN 540
+ + + + K K +H E+ + R+ P K+ S + +V + +K+++I N
Sbjct: 500 MSLSFMQLQNKRVKPSVHAEDNLKTRKQVPRKRQKQVDSADVDVPTRKEAKSKKRKIIGN 559
Query: 541 PVDSDDSDVEN 573
D+DD+D +N
Sbjct: 560 DGDNDDNDGDN 570
>At5g58370.2 68418.m07309 expressed protein
Length = 465
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +1
Query: 358 KRTLLKIPIVMVPRKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRL 537
KR L + + PR+SS + + K +Q+ + SD +E P KRKRIRL
Sbjct: 116 KRDELDSNVDVSPRESSD----VPSFKARKQVFSEKRVVGDGSDVQE--DKPRKRKRIRL 169
Query: 538 NPVDSDDSDV 567
+P D+ + +
Sbjct: 170 DPYDTSNKRI 179
>At5g58370.1 68418.m07308 expressed protein
Length = 446
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +1
Query: 358 KRTLLKIPIVMVPRKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRL 537
KR L + + PR+SS + + K +Q+ + SD +E P KRKRIRL
Sbjct: 116 KRDELDSNVDVSPRESSD----VPSFKARKQVFSEKRVVGDGSDVQE--DKPRKRKRIRL 169
Query: 538 NPVDSDDSDV 567
+P D+ + +
Sbjct: 170 DPYDTSNKRI 179
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 511 PTKRKRIRLNPVDSDDSDVENKADNKI 591
PTK K IR +D+D+ D ++K+++ I
Sbjct: 74 PTKSKNIRKRTIDADEEDGDSKSESSI 100
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 511 PTKRKRIRLNPVDSDDSDVENKADNKI 591
PTK K IR +D+D+ D ++K+++ I
Sbjct: 74 PTKSKNIRKRTIDADEEDGDSKSESSI 100
>At5g34900.1 68418.m04114 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At1g32840, At4g04010,
At2g06430, At2g15140, At2g04980, At2g14130, At3g44500,
At2g15190, At3g47260, At3g29210, At2g02210, At3g32900
Length = 767
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/62 (22%), Positives = 30/62 (48%)
Frame = +1
Query: 400 KSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSDVENKA 579
K K +H E+ + R+ P K+ S + + +PT+++ + + +D + +N
Sbjct: 446 KRVKPSVHAEDNLKTRKQVPRKRQKQVDSAD---VDVPTRKESKKRKIIGNDGDNADNDD 502
Query: 580 DN 585
DN
Sbjct: 503 DN 504
>At3g11720.1 68416.m01437 expressed protein
Length = 542
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 403 SSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSDVENKAD 582
SS E+K + + SPE+K+A E VIS+ K K N S + + E +
Sbjct: 373 SSSSSSEDEDKNGKTRFCISPEVKQALGTLERVISMVRKSKTDNNNTSTSSEEEEEEASS 432
Query: 583 N 585
+
Sbjct: 433 S 433
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 28.7 bits (61), Expect = 3.6
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = +1
Query: 394 PRKSSKKGIHLENKKRERQITPSPELK-----KASSDEEEVISLPTKRKRIRLNPVDSDD 558
P SSK+ E + E + P P K S DE ++I P R + DSDD
Sbjct: 93 PPPSSKRTQEEEEEDEEVMMGPPPPPKGLGNINDSDDEGDMIGPPPPPPAARDSDEDSDD 152
Query: 559 SDVENKADNK 588
D + +N+
Sbjct: 153 DDDNDNEENR 162
>At1g19430.1 68414.m02421 dehydration-responsive protein-related low
similarity to early-responsive to dehydration stress
ERD3 protein [Arabidopsis thaliana] GI:15320410;
contains Pfam profile PF03141: Putative
methyltransferase
Length = 724
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +1
Query: 397 RKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSDVENK 576
+K +H K++++ S KK + V + K + +SDDSD NK
Sbjct: 97 KKVGGSSVHKHETKKKKEHAVSHPHKKKDVPKPVVEEVVVKEDQEH-EEAESDDSDQSNK 155
Query: 577 ADNKIGT 597
D + GT
Sbjct: 156 EDGEEGT 162
>At4g08430.1 68417.m01392 Ulp1 protease family protein similar to
At5g45570, At5g28235; contains Pfam profile PF02902:
Ulp1 protease family, C-terminal catalytic domain
Length = 808
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 400 KSSKKGIHLENKKRERQITPSPELKKASSDEEEVIS-LPTKRKRIRLNPVDSDDSDVENK 576
KS KK + +K E+ P PE+KK + E+V S P K+K + + D DV +
Sbjct: 377 KSDKKKTIVNVEKVEK---PKPEMKKTAVKVEKVDSPKPEKKKSVVAPTTKTFDDDVVDV 433
Query: 577 AD 582
D
Sbjct: 434 TD 435
>At3g42190.1 68416.m04340 hypothetical protein
Length = 695
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 385 VMVPRKSSKKGIHLENKKRERQITPSPELKKASSDE-EEVISLPT 516
+ + +S G+HL N ERQ+ P + KAS++ + VI T
Sbjct: 467 IQCAQPTSGDGVHLSNVVEERQVCPVSDDGKASAENLDNVIKYGT 511
>At3g16730.1 68416.m02136 expressed protein ; expression supported
by MPSS
Length = 695
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 397 RKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRL 537
RK+ K+GIHL K+ + IT + + S+ ++ +++ L
Sbjct: 606 RKNEKRGIHLPQKRAKSPITKGKSHESPPPKKRNTCSVSSQTRKVSL 652
>At1g17820.1 68414.m02206 expressed protein
Length = 803
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 370 LKIPIVMVPRKSSKKGIHLENKKRERQITPSPELKKASSDEEE 498
LK P+ +VP S+K+ + RE SP ASS+E++
Sbjct: 717 LKTPL-LVPSSSNKQETNSRGSSREVSAVQSPSRSVASSEEDD 758
>At4g00310.1 68417.m00039 expressed protein
Length = 302
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 436 KRERQITPSPELKKASSDEEEVISLPTKRKRIR 534
K+ + P+ +K + DE+ V+++PT KR R
Sbjct: 143 KKSEALEPNSPVKTSGDDEKVVVTIPTAPKRGR 175
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +1
Query: 394 PRKSSKKGIHLENKKRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSDVEN 573
PR + + + R R + S ++K S DEE + KR R R S D
Sbjct: 643 PRDDEENKVKRRTRSRSRSVEDSADIKDKSRDEE--LKHHKKRSRSRSREDRSKTRDTSR 700
Query: 574 KAD 582
+D
Sbjct: 701 NSD 703
>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
contains Pfam profile PF00856: SET domain
Length = 1423
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/49 (26%), Positives = 31/49 (63%)
Frame = +1
Query: 436 KRERQITPSPELKKASSDEEEVISLPTKRKRIRLNPVDSDDSDVENKAD 582
++ R+ + S LK+ +E++ ++P++R R+ L+ DS+D+ ++ D
Sbjct: 1061 QKGRKSSQSSILKRKHQLDEKISNVPSRR-RLSLSSTDSEDAVIKEDYD 1108
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,125,203
Number of Sequences: 28952
Number of extensions: 204329
Number of successful extensions: 702
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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