SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a11f
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65910.1 68414.m07479 no apical meristem (NAM) family protein...    31   0.90 
At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)...    30   1.6  
At1g02110.1 68414.m00137 proline-rich family protein contains pr...    30   1.6  
At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate syntha...    29   2.1  
At2g18800.1 68415.m02188 xyloglucan:xyloglucosyl transferase, pu...    29   2.7  
At1g76530.1 68414.m08906 auxin efflux carrier family protein con...    29   2.7  
At5g60970.1 68418.m07648 TCP family transcription factor, putati...    29   3.6  
At5g50670.1 68418.m06279 squamosa promoter-binding protein, puta...    29   3.6  
At5g50570.2 68418.m06264 squamosa promoter-binding protein, puta...    29   3.6  
At5g50570.1 68418.m06263 squamosa promoter-binding protein, puta...    29   3.6  
At4g09780.1 68417.m01607 meprin and TRAF homology domain-contain...    29   3.6  
At3g47100.1 68416.m05114 expressed protein                             28   4.8  
At5g54230.1 68418.m06755 myb family transcription factor (MYB49)...    28   6.3  
At5g27060.1 68418.m03229 disease resistance family protein conta...    27   8.4  
At3g63070.1 68416.m07084 PWWP domain-containing protein putative...    27   8.4  
At1g45130.1 68414.m05173 beta-galactosidase, putative / lactase,...    27   8.4  

>At1g65910.1 68414.m07479 no apical meristem (NAM) family protein
           similar to jasmonic acid 2 GI:6175246 from [Lycopersicon
           esculentum]; similar to NAC2 (GI:6456751) {Arabidopsis
           thaliana}
          Length = 631

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
 Frame = +1

Query: 241 AKYMPSSQKYNEFNSTVETGVAQVSHFPPILD-YTENTYQQQFPGTNLYNATTNTISNSF 417
           ++Y   S   ++ +  +E    Q    PP+   Y E     ++ G N+ N T   +S   
Sbjct: 245 SQYGTISYPPSKVDIALECARLQNRMLPPVPPLYVEGLTHNEYFGNNVANDTDEMLSKII 304

Query: 418 Y----SNFMQNSGNLMTGNYASGPFPGDFIDYNQPTECHNYTSHKYEDLKMRNSSNYQQE 585
                S+  +NS +   G  ASG F GDF    +   C        +     +  N+++E
Sbjct: 305 ALAQASHEPRNSLDSWDGGSASGNFHGDFNYSGEKVSCLEANVEAVD--MQEHHVNFKEE 362

Query: 586 KLPSNYK 606
           +L  N +
Sbjct: 363 RLVENLR 369


>At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)
           (FAS1) identical to FAS1 [Arabidopsis thaliana]
           GI:4887626
          Length = 815

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 550 LKMRNSSNYQQEKLPSNYKTSRRESATKHKLECSK 654
           LK    S+  Q KLPS+  T++  S TKH+ E  K
Sbjct: 343 LKKSKDSSLTQPKLPSSEVTAQELSCTKHENEIGK 377


>At1g02110.1 68414.m00137 proline-rich family protein contains
           proline-rich domain, INTERPRO:IPR000694
          Length = 679

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
 Frame = +1

Query: 322 PPILDYTENTYQQQFPGTNLYNATTNTISNSFYSNFMQNSGNLMTGNYASGPFPGDFIDY 501
           PPI    + T  ++ P     ++ +++ + SFY    QNS    + + AS  +  +    
Sbjct: 94  PPIRSKPKPTRPRRLPHILSDSSPSSSPATSFYPTAHQNSTYSRSPSQASSVWNWENFYP 153

Query: 502 NQPTECHNYTSHKYEDLKMRNSSNY--QQEKLPSNYKTSRRESATKHKLECSK 654
             P +   +     ++ K R  S+Y  + E+   +Y  SRR++A   ++ CS+
Sbjct: 154 PSPPDSEYFERKARQNHKHRPPSDYDAETERSDHDYCHSRRDAA--EEVHCSE 204


>At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate synthase,
           UDP-forming, putative / trehalose-6-phosphate synthase,
           putative / UDP-glucose-glucosephosphate
           glucosyltransferase, putative similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325; contains Pfam profiles
           PF00982: Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 942

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +3

Query: 291 RNWCSTSVSLPADLRLHGEY----VPTTIPWH*SIQRYNEHNLELFLQQLHAE*RQPHDW 458
           + W  T VS   D  +  +     VP  +P H +IQRY++ N  L +   +A   +P D 
Sbjct: 547 QEWAETFVSELNDTVIEAQLRISKVPPELPQHDAIQRYSKSNNRLLILGFNATLTEPVDN 606

Query: 459 ELRK 470
           + R+
Sbjct: 607 QGRR 610


>At2g18800.1 68415.m02188 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase TCH4 GI:886116 from
           [Arabidopsis thaliana]
          Length = 305

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 442 GNLMTGNYASGPFPGDFIDYNQPTEC 519
           G L+  N++ GPF   F++YN    C
Sbjct: 200 GGLVKTNWSQGPFVASFMNYNSENAC 225


>At1g76530.1 68414.m08906 auxin efflux carrier family protein
           contains auxin efflux carrier domain, Pfam:PF03547
          Length = 415

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 502 NQPTECHNYT-SHKYED-LKMRNSSNYQQEKLPSNYKTSRRESATKHKLECSKK 657
           N P E H ++    Y+D  K++  S+ ++EK   N++  R E   +  +  SKK
Sbjct: 189 NSPVETHTHSIESNYDDSCKVQLISSKEEEKEEDNHQVGRWEEVKQRVVSLSKK 242


>At5g60970.1 68418.m07648 TCP family transcription factor, putative
           putative basic helix-loop-helix DNA binding protein
           TCP2, Arabidopsis thaliana, EMBL:AF072691
          Length = 360

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 352 YQQQFPGTNLYNATTNTISNSFYSNFMQNSGNLMT 456
           +QQQFP TN YN T+   +       +  SGN +T
Sbjct: 215 HQQQFPLTNPYNNTSAYYNLGHLQQSLDQSGNNVT 249


>At5g50670.1 68418.m06279 squamosa promoter-binding protein,
           putative similar to squamosa promoter binding
           protein-like 9 [Arabidopsis thaliana] GI:5931673;
           contains Pfam profile PF03110: SBP domain
          Length = 359

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -2

Query: 303 YTSFYGRIKLVIFLRGWHVFSTTNVLN 223
           +T F G  KL+ F  G HVF TT+VLN
Sbjct: 187 FTGFQGS-KLLEFSGGSHVFPTTSVLN 212


>At5g50570.2 68418.m06264 squamosa promoter-binding protein,
           putative similar to squamosa promoter binding
           protein-like 9 [Arabidopsis thaliana] GI:5931677;
           contains Pfam profile PF03110: SBP domain
          Length = 359

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -2

Query: 303 YTSFYGRIKLVIFLRGWHVFSTTNVLN 223
           +T F G  KL+ F  G HVF TT+VLN
Sbjct: 187 FTGFQGS-KLLEFSGGSHVFPTTSVLN 212


>At5g50570.1 68418.m06263 squamosa promoter-binding protein,
           putative similar to squamosa promoter binding
           protein-like 9 [Arabidopsis thaliana] GI:5931677;
           contains Pfam profile PF03110: SBP domain
          Length = 359

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -2

Query: 303 YTSFYGRIKLVIFLRGWHVFSTTNVLN 223
           +T F G  KL+ F  G HVF TT+VLN
Sbjct: 187 FTGFQGS-KLLEFSGGSHVFPTTSVLN 212


>At4g09780.1 68417.m01607 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 443

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 190 LRLNNCFFVICFFHFCLPWVLFVYTIPCYYSRKNSLFC 77
           + +++ +F IC  HFCLP++        Y + K+++FC
Sbjct: 18  IAVSSLYFYICKSHFCLPYI--------YTTLKSTIFC 47


>At3g47100.1 68416.m05114 expressed protein 
          Length = 116

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 184 AEALLRGGSCNQKIQDISSAKYMPSSQKYNEFNSTVETGVAQVSHFPP 327
           +E  L G SC++ ++D S  K       Y ++N T +  +AQV    P
Sbjct: 33  SEPSLEGTSCSRLLEDRSLVKREKQLDIYAKWNPTSKNDLAQVQVLKP 80


>At5g54230.1 68418.m06755 myb family transcription factor (MYB49)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 319

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
 Frame = +1

Query: 223 IQDISSAKYMPSSQKYNEFNSTVETGVAQVSHFPPILDYTENTYQQQF--------PGTN 378
           + ++ +  Y P+ Q  N+ N+   T    ++  PP+       Y   +        P  N
Sbjct: 174 LNNVQTESYQPNQQLQNDLNTDQTTFTGLLNSTPPVQWQNNGEYLGDYHSYTGTGDPSNN 233

Query: 379 LYNATTNTISNSFYSNFMQNSGNLMTG-NYASGPFPG 486
                 N  S +F S+ + +  N   G N++S    G
Sbjct: 234 KVPQAGNYSSAAFVSDHINDGENFKAGWNFSSSMLAG 270


>At5g27060.1 68418.m03229 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 957

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
 Frame = +1

Query: 220 KIQDISSAKYMPSSQKYNEFNSTVETGVA----QVSHFPPILDYTENTYQQQFPGT--NL 381
           K +D S+ KYM S   Y +    +  GVA    ++      +D++ N ++ + P +   L
Sbjct: 730 KNEDQSNEKYMGSGLYYQDSMVLMNKGVAMELVRILTIYTAVDFSGNRFEGEIPKSIGLL 789

Query: 382 YNATTNTISNSFYSNFMQNS-GNL 450
                 ++SN+ +S  M +S GNL
Sbjct: 790 KELLVLSLSNNAFSGHMPSSMGNL 813


>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
            transcription factor HUA2, Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1347

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +1

Query: 367  PGTNLYNATTNTISNSFYSNFMQNSGNLMTGNYASG-PFPGDFIDYNQPTECHNYTSHKY 543
            P  N   A +N+ SN F  ++ +N    M G+Y +G P     + Y  P   ++      
Sbjct: 1135 PSQNAQLAMSNSYSNGF--DYRRNPS--MQGDYHAGPPRMNPPMHYGSPEPSYSSRVSLS 1190

Query: 544  EDLKMRNSSNYQQEKLPSNY 603
            + +     SN+Q    PS++
Sbjct: 1191 KSMPRGEGSNFQHRPYPSSH 1210


>At1g45130.1 68414.m05173 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase [Lycopersicon
           esculentum] GI:7939619, beta-galactosidase BG1
           GI:15081596 from [Vitis vinifera]; contains Pfam profile
           PF01301: Glycosyl hydrolases family 35
          Length = 732

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +1

Query: 418 YSNFMQNSGNLMTGNYASGPFPGDFIDYNQPTECHNYTSH-KYEDLKMRNSSNYQQE 585
           Y N+    G    G  A GPF     DY+ P + +      KY  LK  + +  Q E
Sbjct: 291 YINYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLVQEPKYSHLKQLHQAIKQCE 347


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.309    0.124    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,108,849
Number of Sequences: 28952
Number of extensions: 253320
Number of successful extensions: 606
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)

- SilkBase 1999-2023 -