Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a08r
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13220.1 68416.m01654 ABC transporter family protein contains...    30   1.8  
At4g34480.1 68417.m04902 glycosyl hydrolase family 17 protein si...    28   5.5  
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof...    28   7.2  

>At3g13220.1 68416.m01654 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter; similar to white
           protein GB:Q27256 [Anopheles gambiae]
          Length = 685

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -3

Query: 183 RICFYTYMHTKCNLKYNTLFLKYFIKIVYFFNVFCEEIQIIKF-YLNHMTLALPSKMSGI 7
           R+  Y    T C++  + L+  +F+ IVYF   F   I    F  L  + +A+ S+ +G 
Sbjct: 505 RLSVYYVCSTLCDMVAHVLYPTFFMIIVYFMAEFNRNIPCFLFTVLTILLIAITSQGAGE 564

Query: 6   F 4
           F
Sbjct: 565 F 565


>At4g34480.1 68417.m04902 glycosyl hydrolase family 17 protein
           similar to glucan endo-1,3-beta-glucosidase precursor
           SP:P52409 from [Triticum aestivum]
          Length = 356

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/28 (60%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 637 YILKLLSEN-KPAESPSERAFG*FKTKM 717
           YI  L  EN KP  S SERAFG FKT +
Sbjct: 311 YIFALYDENLKPGPS-SERAFGLFKTDL 337


>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 712

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 528 NTFFFVSFENQYYLLLVICIYVF*SLICFVQEILLCVYTKVTFRKQAR 671
           +TFF +++E       V C+Y+F S+  +   ILLC     +FR  AR
Sbjct: 63  DTFFALAYETDN--TDVKCVYLFASVDAYSVSILLCPDALRSFRGYAR 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,067,770
Number of Sequences: 28952
Number of extensions: 269690
Number of successful extensions: 481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)