Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a02r
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41990.1 68415.m05194 expressed protein                             31   0.62 
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si...    31   1.1  
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil...    29   4.4  
At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to...    28   5.8  
At2g36650.1 68415.m04495 expressed protein                             28   7.6  

>At2g41990.1 68415.m05194 expressed protein 
          Length = 297

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 205 APLLMHYSRFLTCISRIFSFTTRVNGSLTNSIFLRMTHSLMLFQKIKF 62
           +PLL+HYS  L     +  FT   NG  TN + +   H + L+  + F
Sbjct: 194 SPLLLHYSNLLLSSGEMNKFTVGRNGE-TNVVTVVQGHQIPLYGGVSF 240


>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 720

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 248 SFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIF 150
           SFV  + P GFP   P  D +F  P++   D+F
Sbjct: 213 SFVPPSSPYGFPSPGPFADDIFDFPSLPVTDLF 245


>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
           to SP|Q12627 from Kluyveromyces lactis and SP|P32891
           from Saccharomyces cerevisiae; contains Pfam FAD linked
           oxidases, C-terminal domain PF02913, Pfam FAD binding
           domain PF01565
          Length = 567

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = -3

Query: 641 NIEVDSNVASDAVVK--IFLAPKYDDNGIPLTLEDNWMKFFELDWFTTKLTAGQNKIIRN 468
           +I V    +++AVVK      PK   + +   LEDN    ++  +F  K     +K + N
Sbjct: 86  DITVGGKDSTEAVVKGEYKQVPKELISQLKTILEDNLTTDYDERYFHGKPQNSFHKAV-N 144

Query: 467 SNEFVIFKEDSVPMTEIMKMLDEGKVP 387
             + V+F      +++I+K  +E KVP
Sbjct: 145 IPDVVVFPRSEEEVSKILKSCNEYKVP 171


>At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to
           Zinc finger protein constans-like 15 (SP:Q9FHH8)
           {Arabidopsis thaliana}
          Length = 386

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 573 IVFGSQEDFDNSVTGDIRINLNV 641
           I+F SQ+DFDN +T  I  + ++
Sbjct: 85  IIFDSQDDFDNDITASIDFSSSI 107


>At2g36650.1 68415.m04495 expressed protein
          Length = 373

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +3

Query: 216 EAKRLIVKNKRFERSQVLAFVVEWIDENKELEWESTFSTSR--QHESFRHVTELFRHIKR 389
           E K  IVK    +   + A+V    +E +EL  +S+ STS     E +R + E +  +K+
Sbjct: 206 ETKNNIVKELEGKVKDMEAYVDVLQEEKEELFMKSSNSTSEMVSVEDYRRIVEEYEELKK 265

Query: 390 -YFSFVEHLHNFSHWHGVFFKYD 455
            Y + V+ + N   W     +++
Sbjct: 266 DYANGVKEVINL-RWSNACLRHE 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,137,458
Number of Sequences: 28952
Number of extensions: 352547
Number of successful extensions: 957
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)