Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a01r
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27860.1 68415.m03377 expressed protein                             31   1.1  
At1g08200.1 68414.m00906 expressed protein                             30   1.5  
At5g63820.1 68418.m08010 expressed protein contains Pfam profile...    29   4.5  

>At2g27860.1 68415.m03377 expressed protein
          Length = 389

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 722 GWNPETDTWDIKQSTASQEIHKLRKLELSYAEVLRNA 612
           GWNP+T  WD+ +ST + + H+      +YAE ++ A
Sbjct: 353 GWNPKTSLWDLLESTLTYQ-HR------TYAEAVKKA 382


>At1g08200.1 68414.m00906 expressed protein
          Length = 389

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 722 GWNPETDTWDIKQSTASQEIHKLRKLELSYAEVLRNA 612
           GWNP+T  WD+ +ST + +         +YAE ++ A
Sbjct: 353 GWNPKTSLWDLLESTLTYQ-------HTTYAEAIKKA 382


>At5g63820.1 68418.m08010 expressed protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 225

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 343 IYKNIFIYSYLYRAVTNSGFVLWQSTNRGYNSIGINSYST 462
           +Y  + +Y Y ++  TN  FV W+  N    +  I++Y T
Sbjct: 48  LYAKLGLYCYNFQKGTNLKFVRWEKYNTSTGTAYIDNYIT 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,865,391
Number of Sequences: 28952
Number of extensions: 254824
Number of successful extensions: 600
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)